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This article introduces a new DNA sequence compression algorithm which is based on LUT and LZ77 algorithm. Combined a LUT-based pre-coding routine and LZ77 compression routine,this algorithm can approach a compression ratio of 1.9bits…

Information Theory · Computer Science 2007-07-16 Sheng Bao , Shi Chen , Zhiqiang Jing , Ran Ren

We present an algorithm that computes the Lempel-Ziv decomposition in $O(n(\log\sigma + \log\log n))$ time and $n\log\sigma + \epsilon n$ bits of space, where $\epsilon$ is a constant rational parameter, $n$ is the length of the input…

Data Structures and Algorithms · Computer Science 2015-06-09 Dmitry Kosolobov

In this paper we introduce a new formulation of Bennett's logical depth based on pebble transducers. This notion is defined based on the difference between the minimal length descriptional complexity of prefixes of infinite sequences from…

Computational Complexity · Computer Science 2022-01-20 Liam Jordon , Philippe Moser

In this paper, we introduce a proximal-proximal majorization-minimization (PPMM) algorithm for nonconvex tuning-free robust regression problems. The basic idea is to apply the proximal majorization-minimization algorithm to solve the…

Optimization and Control · Mathematics 2021-06-28 Peipei Tang , Chengjing Wang , Bo Jiang

We consider the topic of universal decoding with a decoder that does not have direct access to the codebook, but only to noisy versions of the various randomly generated codewords, a problem motivated by biometrical identification systems.…

Information Theory · Computer Science 2016-09-05 Neri Merhav

Traditionally, data compression deals with the problem of concisely representing a data source, e.g. a sequence of letters, for the purpose of eventual reproduction (either exact or approximate). In this work we are interested in the case…

Information Theory · Computer Science 2013-12-10 Amir Ingber , Tsachy Weissman

Inspired by regularization techniques in statistics and machine learning, we study complementary composite minimization in the stochastic setting. This problem corresponds to the minimization of the sum of a (weakly) smooth function endowed…

Machine Learning · Computer Science 2024-01-24 Alexandre d'Aspremont , Cristóbal Guzmán , Clément Lezane

Despite the remarkable success of Large Language Models (LLMs), the massive size poses significant deployment challenges, particularly on resource-constrained hardware. While existing LLM compression methods focus on quantization, pruning…

Artificial Intelligence · Computer Science 2023-10-12 Song Guo , Jiahang Xu , Li Lyna Zhang , Mao Yang

We present a smooth probabilistic reformulation of $\ell_0$ regularized regression that does not require Monte Carlo sampling and allows for the computation of exact gradients, facilitating rapid convergence to local optima of the best…

Machine Learning · Computer Science 2025-09-19 Lukas Silvester Barth , Paulo von Petersenn

We consider several types of internal queries, that is, questions about fragments of a given text $T$ specified in constant space by their locations in $T$. Our main result is an optimal data structure for Internal Pattern Matching (IPM)…

Data Structures and Algorithms · Computer Science 2023-05-03 Tomasz Kociumaka , Jakub Radoszewski , Wojciech Rytter , Tomasz Waleń

Matrix-level low-rank compression is a promising way to reduce the cost of large language models, but running compression and evaluating the resulting models on language tasks can be prohibitively expensive. Can compression-induced…

Machine Learning · Computer Science 2026-04-21 Mingxue Xu

In this paper, we propose to mix the approach underlying Bandt-Pompe permutation entropy with Lempel-Ziv complexity, to design what we call Lempel-Ziv permutation complexity. The principle consists of two steps: (i) transformation of a…

Data Analysis, Statistics and Probability · Physics 2014-05-13 S. Zozor , D. Mateos , P. W. Lamberti

We propose a new approach for universal lossless text compression, based on grammar compression. In the literature, a target string $T$ has been compressed as a context-free grammar $G$ in Chomsky normal form satisfying $L(G) = \{T\}$. Such…

Data Structures and Algorithms · Computer Science 2020-03-19 Hiroaki Naganuma , Diptarama Hendrian , Ryo Yoshinaka , Ayumi Shinohara , Naoki Kobayashi

Since the Bin Packing Problem (BPP) is one of the main NP-hard problems, a lot of approximation algorithms have been suggested for it. It has been proven that the best algorithm for BPP has the approximation ratio of 3/2 and the time order…

Discrete Mathematics · Computer Science 2016-10-28 Abdolahad Noori Zehmakan

A natural approach to software quality assurance consists in writing unit tests securing programmer-declared code invariants. Throughout the literature a great body of work has been devoted to tools and techniques automating this…

Logic in Computer Science · Computer Science 2017-09-14 Maciej Bendkowski , Katarzyna Grygiel , Paul Tarau

Distribution matching is a fixed-length invertible mapping from a uniformly distributed bit sequence to shaped amplitudes and plays an important role in the probabilistic amplitude shaping framework. With conventional constantcomposition…

Signal Processing · Electrical Eng. & Systems 2018-08-13 Tobias Fehenberger , David S. Millar , Toshiaki Koike-Akino , Keisuke Kojima , Kieran Parsons

The order preserving pattern matching (OPPM) problem is, given a pattern string $p$ and a text string $t$, find all substrings of $t$ which have the same relative orders as $p$. In this paper, we consider two variants of the OPPM problem…

Data Structures and Algorithms · Computer Science 2017-07-26 Temma Nakamura , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

A packing lemma is proved using a setting where the channel is a binary-input discrete memoryless channel $(\mathcal{X},w(y|x),\mathcal{Y})$, the code is selected at random subject to parity-check constraints, and the decoder is a joint…

Information Theory · Computer Science 2015-05-05 Erdal Arıkan

Random access to highly compressed strings -- represented by straight-line programs or Lempel-Ziv parses, for example -- is a well-studied topic. Random access to such strings in strongly sublogarithmic time is impossible in the worst case,…

Data Structures and Algorithms · Computer Science 2026-02-05 Ferdinando Cicalese , Zsuzsanna Lipták , Travis Gagie , Gonzalo Navarro , Nicola Prezza , Cristian Urbina

Modern model hubs, such as Hugging Face, store tens of petabytes of LLMs, with fine-tuned variants vastly outnumbering base models and dominating storage consumption. Existing storage reduction techniques -- such as deduplication and…

Databases · Computer Science 2025-11-11 Zirui Wang , Tingfeng Lan , Zhaoyuan Su , Juncheng Yang , Yue Cheng
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