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Extracting informative representations of molecules using Graph neural networks (GNNs) is crucial in AI-driven drug discovery. Recently, the graph research community has been trying to replicate the success of self-supervised pretraining in…

Machine Learning · Computer Science 2022-11-03 Ruoxi Sun , Hanjun Dai , Adams Wei Yu

As they carry great potential for modeling complex interactions, graph neural network (GNN)-based methods have been widely used to predict quantum mechanical properties of molecules. Most of the existing methods treat molecules as molecular…

Machine Learning · Computer Science 2020-09-29 Zeren Shui , George Karypis

By the widespread popularity of electronic devices, the emergence of biometric technology has brought significant convenience to user authentication compared with the traditional password and mode unlocking. Among many biological…

Computer Vision and Pattern Recognition · Computer Science 2019-04-29 Ning Zhu

In neural architecture search (NAS), the space of neural network architectures is automatically explored to maximize predictive accuracy for a given task. Despite the success of recent approaches, most existing methods cannot be directly…

Machine Learning · Statistics 2019-02-15 Francesco Paolo Casale , Jonathan Gordon , Nicolo Fusi

Predicting drug side-effects before they occur is a key task in keeping the number of drug-related hospitalizations low and to improve drug discovery processes. Automatic predictors of side-effects generally are not able to process the…

Machine Learning · Statistics 2022-12-01 Pietro Bongini , Elisa Messori , Niccolò Pancino , Monica Bianchini

Graph neural networks (GNNs) are a popular class of machine learning models whose major advantage is their ability to incorporate a sparse and discrete dependency structure between data points. Unfortunately, GNNs can only be used when such…

Machine Learning · Computer Science 2020-06-22 Luca Franceschi , Mathias Niepert , Massimiliano Pontil , Xiao He

Neural Architecture Search (NAS) enabled the discovery of state-of-the-art architectures in many domains. However, the success of NAS depends on the definition of the search space. Current search spaces are defined as a static sequence of…

Machine Learning · Computer Science 2019-08-01 Stanisław Jastrzębski , Quentin de Laroussilhe , Mingxing Tan , Xiao Ma , Neil Houlsby , Andrea Gesmundo

Neural architecture search (NAS) has shown promise towards automating neural network design for a given task, but it is computationally demanding due to training costs associated with evaluating a large number of architectures to find the…

Computer Vision and Pattern Recognition · Computer Science 2025-02-07 Shahid Siddiqui , Christos Kyrkou , Theocharis Theocharides

Networks found with Neural Architecture Search (NAS) achieve state-of-the-art performance in a variety of tasks, out-performing human-designed networks. However, most NAS methods heavily rely on human-defined assumptions that constrain the…

Computer Vision and Pattern Recognition · Computer Science 2023-01-10 Vasco Lopes , Luís A. Alexandre

Neural Architecture Search (NAS) automates and prospers the design of neural networks. Estimator-based NAS has been proposed recently to model the relationship between architectures and their performance to enable scalable and flexible…

Artificial Intelligence · Computer Science 2020-09-29 Hsin-Pai Cheng , Tunhou Zhang , Yixing Zhang , Shiyu Li , Feng Liang , Feng Yan , Meng Li , Vikas Chandra , Hai Li , Yiran Chen

Neural Architecture Search (NAS) methods have shown to output networks that largely outperform human-designed networks. However, conventional NAS methods have mostly tackled the single dataset scenario, incuring in a large computational…

Computer Vision and Pattern Recognition · Computer Science 2024-05-14 Sofia Casarin , Oswald Lanz , Sergio Escalera

In recent years, neural architecture search (NAS) has received intensive scientific and industrial interest due to its capability of finding a neural architecture with high accuracy for various artificial intelligence tasks such as image…

Machine Learning · Computer Science 2021-01-18 Martin Ferianc , Hongxiang Fan , Miguel Rodrigues

Graph Neural Network (GNN) is a popular architecture for the analysis of chemical molecules, and it has numerous applications in material and medicinal science. Current lines of GNNs developed for molecular analysis, however, do not fit…

Machine Learning · Computer Science 2019-05-27 Katsuhiko Ishiguro , Shin-ichi Maeda , Masanori Koyama

Graph Neural Architecture Search (GNAS) has achieved superior performance on various graph-structured tasks. However, existing GNAS studies overlook the applications of GNAS in resource-constraint scenarios. This paper proposes to design a…

Machine Learning · Computer Science 2024-06-25 Beini Xie , Heng Chang , Ziwei Zhang , Zeyang Zhang , Simin Wu , Xin Wang , Yuan Meng , Wenwu Zhu

Neural architecture search has shown its great potential in various areas recently. However, existing methods rely heavily on a black-box controller to search architectures, which suffers from the serious problem of lacking…

Machine Learning · Computer Science 2020-09-29 Xinyue Zheng , Peng Wang , Qigang Wang , Zhongchao Shi

Deep convolutional neural network (CNN) training via iterative optimization has had incredible success in finding optimal parameters. However, modern CNN architectures often contain millions of parameters. Thus, any given model for a single…

Machine Learning · Computer Science 2023-08-21 Stone Yun , Alexander Wong

Neural Architecture Search (NAS) is a popular tool for automatically generating Neural Network (NN) architectures. In early NAS works, these tools typically optimized NN architectures for a single metric, such as accuracy. However, in the…

Neural and Evolutionary Computing · Computer Science 2023-04-05 Emil Njor , Jan Madsen , Xenofon Fafoutis

Effectively predicting molecular interactions has the potential to accelerate molecular dynamics by multiple orders of magnitude and thus revolutionize chemical simulations. Graph neural networks (GNNs) have recently shown great successes…

Computational Physics · Physics 2024-06-25 Johannes Gasteiger , Florian Becker , Stephan Günnemann

Most existing neural architecture search (NAS) algorithms are dedicated to and evaluated by the downstream tasks, e.g., image classification in computer vision. However, extensive experiments have shown that, prominent neural architectures,…

Machine Learning · Computer Science 2021-11-18 Yuhong Li , Cong Hao , Pan Li , Jinjun Xiong , Deming Chen

Molecular dynamics simulations can generate atomically detailed trajectories of complex systems, but analyzing these dynamics can be challenging when systems lack well-established quantitative descriptors (features). Graph neural networks…

Machine Learning · Computer Science 2025-12-09 Zihan Pengmei , Spencer C. Guo , Chatipat Lorpaiboon , Aaron R. Dinner