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Property prediction on molecular graphs is an important application of Graph Neural Networks. Recently, unlabeled molecular data has become abundant, which facilitates the rapid development of self-supervised learning for GNNs in the…

Machine Learning · Computer Science 2023-10-31 Kha-Dinh Luong , Ambuj Singh

Neural architecture search (NAS) methods aim to automatically find the optimal deep neural network (DNN) architecture as measured by a given objective function, typically some combination of task accuracy and inference efficiency. For many…

Machine Learning · Computer Science 2021-10-29 Ravi Krishna , Aravind Kalaiah , Bichen Wu , Maxim Naumov , Dheevatsa Mudigere , Misha Smelyanskiy , Kurt Keutzer

There are many research works on the designing of architectures for the deep neural networks (DNN), which are named neural architecture search (NAS) methods. Although there are many automatic and manual techniques for NAS problems, there is…

Computer Vision and Pattern Recognition · Computer Science 2020-01-01 Emad Malekhosseini , Mohsen Hajabdollahi , Nader Karimi , Shadrokh Samavi

Supervised learning on molecules has incredible potential to be useful in chemistry, drug discovery, and materials science. Luckily, several promising and closely related neural network models invariant to molecular symmetries have already…

Machine Learning · Computer Science 2017-06-14 Justin Gilmer , Samuel S. Schoenholz , Patrick F. Riley , Oriol Vinyals , George E. Dahl

Graph neural architecture search (GNAS) can customize high-performance graph neural network architectures for specific graph tasks or datasets. However, existing GNAS methods begin searching for architectures from a zero-knowledge state,…

Neural and Evolutionary Computing · Computer Science 2024-11-27 Chao Wang , Jiaxuan Zhao , Lingling Li , Licheng Jiao , Fang Liu , Xu Liu , Shuyuan Yang

Deep learning has become in recent years a cornerstone tool fueling key innovations in the industry, such as autonomous driving. To attain good performances, the neural network architecture used for a given application must be chosen with…

Computer Vision and Pattern Recognition · Computer Science 2021-09-17 Anthony Cazasnoves , Pierre-Antoine Ganaye , Kévin Sanchis , Tugdual Ceillier

Machine learning methods have shown promise in predicting molecular properties, and given sufficient training data machine learning approaches can enable rapid high-throughput virtual screening of large libraries of compounds. Graph-based…

Modeling molecular potential energy surface is of pivotal importance in science. Graph Neural Networks have shown great success in this field. However, their message passing schemes need special designs to capture geometric information and…

Machine Learning · Computer Science 2023-04-24 Xiyuan Wang , Muhan Zhang

Recently many efforts have been devoted to applying graph neural networks (GNNs) to molecular property prediction which is a fundamental task for computational drug and material discovery. One of major obstacles to hinder the successful…

Machine Learning · Computer Science 2021-09-27 Shuangli Li , Jingbo Zhou , Tong Xu , Dejing Dou , Hui Xiong

The quest for accurate prediction of drug molecule properties poses a fundamental challenge in the realm of Artificial Intelligence Drug Discovery (AIDD). An effective representation of drug molecules emerges as a pivotal component in this…

Machine Learning · Computer Science 2024-04-22 Zhuoyuan Wang , Jiacong Mi , Shan Lu , Jieyue He

Machine learning (ML) is revolutionizing protein structural analysis, including an important subproblem of predicting protein residue contact maps, i.e., which amino-acid residues are in close spatial proximity given the amino-acid sequence…

Quantitative Methods · Quantitative Biology 2022-12-23 Kuang Liu , Rajiv K. Kalia , Xinlian Liu , Aiichiro Nakano , Ken-ichi Nomura , Priya Vashishta , Rafael Zamora-Resendizc

Graph Neural Architecture Search (GNAS) facilitates the automatic design of Graph Neural Networks (GNNs) tailored to specific downstream graph learning tasks. However, existing GNAS approaches often require manual adaptation to new graph…

Machine Learning · Computer Science 2025-02-18 Yang Gao , Hong Yang , Yizhi Chen , Junxian Wu , Peng Zhang , Haishuai Wang

Neural architecture search (NAS) has emerged as a promising avenue for automatically designing task-specific neural networks. Existing NAS approaches require one complete search for each deployment specification of hardware or objective.…

Computer Vision and Pattern Recognition · Computer Science 2021-03-23 Zhichao Lu , Gautam Sreekumar , Erik Goodman , Wolfgang Banzhaf , Kalyanmoy Deb , Vishnu Naresh Boddeti

The success of deep neural networks relies on significant architecture engineering. Recently neural architecture search (NAS) has emerged as a promise to greatly reduce manual effort in network design by automatically searching for optimal…

Computer Vision and Pattern Recognition · Computer Science 2020-02-26 Ning Wang , Yang Gao , Hao Chen , Peng Wang , Zhi Tian , Chunhua Shen , Yanning Zhang

Learning expressive molecular representations is crucial to facilitate the accurate prediction of molecular properties. Despite the significant advancement of graph neural networks (GNNs) in molecular representation learning, they generally…

Machine Learning · Computer Science 2023-05-19 Hossein Hajiabolhassan , Zahra Taheri , Ali Hojatnia , Yavar Taheri Yeganeh

Graph classification is an important problem with applications across many domains, like chemistry and bioinformatics, for which graph neural networks (GNNs) have been state-of-the-art (SOTA) methods. GNNs are designed to learn node-level…

Machine Learning · Computer Science 2021-08-25 Lanning Wei , Huan Zhao , Quanming Yao , Zhiqiang He

Since the introduction of artificial intelligence in medicinal chemistry, the necessity has emerged to analyse how molecular property variation is modulated by either single atoms or chemical groups. In this paper, we propose to train…

Biomolecules · Quantitative Biology 2022-02-14 Alessio Ragno , Dylan Savoia , Roberto Capobianco

In this paper, we propose a new neural architecture search (NAS) problem of Symmetric Positive Definite (SPD) manifold networks, aiming to automate the design of SPD neural architectures. To address this problem, we first introduce a…

Machine Learning · Computer Science 2021-06-15 Rhea Sanjay Sukthanker , Zhiwu Huang , Suryansh Kumar , Erik Goron Endsjo , Yan Wu , Luc Van Gool

Neural architecture search (NAS) aims to automate architecture design processes and improve the performance of deep neural networks. Platform-aware NAS methods consider both performance and complexity and can find well-performing…

Neural and Evolutionary Computing · Computer Science 2022-07-22 Yuhei Noda , Shota Saito , Shinichi Shirakawa

Neural Architecture Search (NAS) automates the design of high-performing neural networks but typically targets a single predefined task, thereby restricting its real-world applicability. To address this, Meta Neural Architecture Search…

Machine Learning · Computer Science 2025-08-14 Zijun Sun , Yanning Shen