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The current UMLS (Unified Medical Language System) Metathesaurus construction process for integrating over 200 biomedical source vocabularies is expensive and error-prone as it relies on the lexical algorithms and human editors for deciding…
Deep learning-based language models pretrained on large unannotated text corpora have been demonstrated to allow efficient transfer learning for natural language processing, with recent approaches such as the transformer-based BERT model…
Recently developed large pre-trained language models, e.g., BERT, have achieved remarkable performance in many downstream natural language processing applications. These pre-trained language models often contain hundreds of millions of…
Efficient text classification is essential for handling the increasing volume of academic publications. This study explores the use of pre-trained language models (PLMs), including BERT, SciBERT, BioBERT, and BlueBERT, fine-tuned on the Web…
Despite the widespread success of self-supervised learning via masked language models (MLM), accurately capturing fine-grained semantic relationships in the biomedical domain remains a challenge. This is of paramount importance for…
Whole word masking (WWM), which masks all subwords corresponding to a word at once, makes a better English BERT model. For the Chinese language, however, there is no subword because each token is an atomic character. The meaning of a word…
Most pre-trained language models (PLMs) construct word representations at subword level with Byte-Pair Encoding (BPE) or its variations, by which OOV (out-of-vocab) words are almost avoidable. However, those methods split a word into…
Query understanding plays a key role in exploring users' search intents and facilitating users to locate their most desired information. However, it is inherently challenging since it needs to capture semantic information from short and…
We present BERTweet, the first public large-scale pre-trained language model for English Tweets. Our BERTweet, having the same architecture as BERT-base (Devlin et al., 2019), is trained using the RoBERTa pre-training procedure (Liu et al.,…
Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…
Understanding and representing webpages is crucial to online social networks where users may share and engage with URLs. Common language model (LM) encoders such as BERT can be used to understand and represent the textual content of…
Recent years have witnessed the burgeoning of pretrained language models (LMs) for text-based natural language (NL) understanding tasks. Such models are typically trained on free-form NL text, hence may not be suitable for tasks like…
An important question concerning contextualized word embedding (CWE) models like BERT is how well they can represent different word senses, especially those in the long tail of uncommon senses. Rather than build a WSD system as in previous…
Multi-modal data abounds in biomedicine, such as radiology images and reports. Interpreting this data at scale is essential for improving clinical care and accelerating clinical research. Biomedical text with its complex semantics poses…
Pre-trained language models have recently contributed to significant advances in NLP tasks. Recently, multi-modal versions of BERT have been developed, using heavy pre-training relying on vast corpora of aligned textual and image data,…
Pre-training models such as BERT have achieved great success in many natural language processing tasks. However, how to obtain better sentence representation through these pre-training models is still worthy to exploit. Previous work has…
Contextualized word embeddings derived from pre-trained language models (LMs) show significant improvements on downstream NLP tasks. Pre-training on domain-specific corpora, such as biomedical articles, further improves their performance.…
In recent years, major advancements in natural language processing (NLP) have been driven by the emergence of large language models (LLMs), which have significantly revolutionized research and development within the field. Building upon…
With the rapid growth of the scientific literature, manually selecting appropriate citations for a paper is becoming increasingly challenging and time-consuming. While several approaches for automated citation recommendation have been…
Though achieving impressive results on many NLP tasks, the BERT-like masked language models (MLM) encounter the discrepancy between pre-training and inference. In light of this gap, we investigate the contextual representation of…