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With the explosive growth of biomedical literature, designing automatic tools to extract information from the literature has great significance in biomedical research. Recently, transformer-based BERT models adapted to the biomedical domain…

Computation and Language · Computer Science 2020-11-03 Peng Su , K. Vijay-Shanker

Recognition of biomedical entities from literature is a challenging research focus, which is the foundation for extracting a large amount of biomedical knowledge existing in unstructured texts into structured formats. Using the sequence…

Computation and Language · Computer Science 2021-05-18 Cong Sun , Zhihao Yang , Lei Wang , Yin Zhang , Hongfei Lin , Jian Wang

The application of Natural Language Processing (NLP) has achieved a high level of relevance in several areas. In the field of software engineering (SE), NLP applications are based on the classification of similar texts (e.g. software…

Software Engineering · Computer Science 2021-12-02 Eliane Maria De Bortoli Fávero , Dalcimar Casanova

Large scale self-supervised pre-training of Transformer language models has advanced the field of Natural Language Processing and shown promise in cross-application to the biological `languages' of proteins and DNA. Learning effective…

Machine Learning · Computer Science 2021-12-15 Meredith V. Trotter , Cuong Q. Nguyen , Stephen Young , Rob T. Woodruff , Kim M. Branson

We introduce a new pre-trainable generic representation for visual-linguistic tasks, called Visual-Linguistic BERT (VL-BERT for short). VL-BERT adopts the simple yet powerful Transformer model as the backbone, and extends it to take both…

Computer Vision and Pattern Recognition · Computer Science 2020-02-19 Weijie Su , Xizhou Zhu , Yue Cao , Bin Li , Lewei Lu , Furu Wei , Jifeng Dai

In this work, we examine the extent to which embeddings may encode marginalized populations differently, and how this may lead to a perpetuation of biases and worsened performance on clinical tasks. We pretrain deep embedding models (BERT)…

Computation and Language · Computer Science 2020-03-26 Haoran Zhang , Amy X. Lu , Mohamed Abdalla , Matthew McDermott , Marzyeh Ghassemi

In recent years, pre-trained language models (PLMs) achieve the best performance on a wide range of natural language processing (NLP) tasks. While the first models were trained on general domain data, specialized ones have emerged to more…

Computation and Language · Computer Science 2023-05-08 Yanis Labrak , Adrien Bazoge , Richard Dufour , Mickael Rouvier , Emmanuel Morin , Béatrice Daille , Pierre-Antoine Gourraud

In this work, we release COVID-Twitter-BERT (CT-BERT), a transformer-based model, pretrained on a large corpus of Twitter messages on the topic of COVID-19. Our model shows a 10-30% marginal improvement compared to its base model,…

Computation and Language · Computer Science 2020-05-18 Martin Müller , Marcel Salathé , Per E Kummervold

Previous work has predominantly focused on monolingual English semantic parsing. We, instead, explore the feasibility of Chinese semantic parsing in the absence of labeled data for Chinese meaning representations. We describe the pipeline…

Computation and Language · Computer Science 2023-06-19 Chunliu Wang , Xiao Zhang , Johan Bos

The exponential growth of online textual content across diverse domains has necessitated advanced methods for automated text classification. Large Language Models (LLMs) based on transformer architectures have shown significant success in…

Computation and Language · Computer Science 2025-09-09 Zhyar Rzgar K Rostam , Gábor Kertész

In this work, we represent Lex-BERT, which incorporates the lexicon information into Chinese BERT for named entity recognition (NER) tasks in a natural manner. Instead of using word embeddings and a newly designed transformer layer as in…

Computation and Language · Computer Science 2021-04-19 Wei Zhu , Daniel Cheung

The academic literature of social sciences records human civilization and studies human social problems. With its large-scale growth, the ways to quickly find existing research on relevant issues have become an urgent demand for…

Computation and Language · Computer Science 2022-11-28 Si Shen , Jiangfeng Liu , Litao Lin , Ying Huang , Lin Zhang , Chang Liu , Yutong Feng , Dongbo Wang

The objective of this study is to develop natural language processing (NLP) models that can analyze patients' drug reviews and accurately classify their satisfaction levels as positive, neutral, or negative. Such models would reduce the…

Computation and Language · Computer Science 2023-08-09 Yue Ling

The pre-training of text encoders normally processes text as a sequence of tokens corresponding to small text units, such as word pieces in English and characters in Chinese. It omits information carried by larger text granularity, and thus…

Computation and Language · Computer Science 2019-11-05 Shizhe Diao , Jiaxin Bai , Yan Song , Tong Zhang , Yonggang Wang

Recent works show that learning contextualized embeddings for words is beneficial for downstream tasks. BERT is one successful example of this approach. It learns embeddings by solving two tasks, which are masked language model (masked LM)…

Computation and Language · Computer Science 2020-11-10 Çağla Aksoy , Alper Ahmetoğlu , Tunga Güngör

Contextual word embedding models, such as BioBERT and Bio_ClinicalBERT, have achieved state-of-the-art results in biomedical natural language processing tasks by focusing their pre-training process on domain-specific corpora. However, such…

Computation and Language · Computer Science 2021-06-04 George Michalopoulos , Yuanxin Wang , Hussam Kaka , Helen Chen , Alexander Wong

Probing complex language models has recently revealed several insights into linguistic and semantic patterns found in the learned representations. In this article, we probe BERT specifically to understand and measure the relational…

Computation and Language · Computer Science 2021-09-09 Jonas Wallat , Jaspreet Singh , Avishek Anand

The enormous growth of research publications has made it challenging for academic search engines to bring the most relevant papers against the given search query. Numerous solutions have been proposed over the years to improve the…

Information Retrieval · Computer Science 2023-01-27 Shah Khalid , Shah Khusro , Aftab Alam , Abdul Wahid

Pretrained language models such as Bidirectional Encoder Representations from Transformers (BERT) have achieved state-of-the-art performance in natural language processing (NLP) tasks. Recently, BERT has been adapted to the biomedical…

Computation and Language · Computer Science 2023-02-06 Li Fang , Qingyu Chen , Chih-Hsuan Wei , Zhiyong Lu , Kai Wang

Recently, the pre-trained language model, BERT (and its robustly optimized version RoBERTa), has attracted a lot of attention in natural language understanding (NLU), and achieved state-of-the-art accuracy in various NLU tasks, such as…

Computation and Language · Computer Science 2019-09-30 Wei Wang , Bin Bi , Ming Yan , Chen Wu , Zuyi Bao , Jiangnan Xia , Liwei Peng , Luo Si
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