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Related papers: Multistability of Small Reaction Networks

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Reaction networks taken with mass-action kinetics arise in many settings, from epidemiology to population biology to systems of chemical reactions. Bistable reaction networks are posited to underlie biochemical switches, which motivates the…

Dynamical Systems · Mathematics 2016-09-20 Badal Joshi , Anne Shiu

Biochemical models that exhibit bistability are of interest to biologists and mathematicians alike. Chemical reaction network theory can provide sufficient conditions for the existence of bistability, and on the other hand can rule out the…

Dynamical Systems · Mathematics 2008-04-28 Anne Shiu

We consider a natural class of reaction networks which consist of reactions where either two species can inactivate each other (i.e., sequestration), or some species can be transformed into another (i.e., transmutation), in a way that gives…

Dynamical Systems · Mathematics 2022-04-12 Gheorghe Craciun , Badal Joshi , Casian Pantea , Ike Tan

Chemical reaction systems are dynamical systems that arise in chemical engineering and systems biology. In this work, we consider the question of whether the minimal (in a precise sense) multistationary chemical reaction networks, which we…

Dynamical Systems · Mathematics 2012-07-10 Badal Joshi , Anne Shiu

Zero-one biochemical reaction networks play key roles in cell signalling such as signalling pathways regulated by protein phosphorylation. Multistability of reaction networks is a crucial dynamics feature enabling decision-making in cells.…

Dynamical Systems · Mathematics 2024-12-20 Yue Jiao , Xiaoxian Tang , Xiaowei Zeng

Which reaction networks, when taken with mass-action kinetics, have the capacity for multiple steady states? There is no complete answer to this question, but over the last 40 years various criteria have been developed that can answer this…

Dynamical Systems · Mathematics 2015-08-21 Badal Joshi , Anne Shiu

We characterize completely the capacity for (nondegenerate) multistationarity of mass action reaction networks with one-dimensional stoichiometric subspace in terms of reaction structure. Specifically, we show that networks with two or more…

Dynamical Systems · Mathematics 2022-08-15 Casian Pantea , Galyna Voitiuk

We study the multistationarity for the reaction networks with one-dimensional stoichiometric subspaces, and we focus on the networks admitting finitely many positive steady states. We prove that if a network admits multistationarity, then…

Dynamical Systems · Mathematics 2021-08-24 Kexin Lin , Xiaoxian Tang , Zhishuo Zhang

Much attention has been focused in recent years on the following algebraic problem arising from applications: which chemical reaction networks, when taken with mass-action kinetics, admit multiple positive steady states? The interest behind…

Dynamical Systems · Mathematics 2018-06-06 Anne Shiu , Timo de Wolff

A multistationarity region is the part of a reaction network's parameter space that gives rise to multiple steady states. Mathematically, this region consists of the positive parameters for which a parametrized family of polynomial…

Dynamical Systems · Mathematics 2024-04-08 Allison McClure , Anne Shiu

For the reaction networks with one-dimensional stoichiometric subspaces, we show the following results. (1) If the maximum number of positive steady states is an even number N, then the maximum number of stable positive steady states is…

Dynamical Systems · Mathematics 2021-02-22 Xiaoxian Tang , Zhishuo Zhang

This article characterizes certain small multistationary chemical reaction networks. We consider the set of fully open networks, those for which all chemical species participate in inflow and outflow, containing one non-flow (reversible or…

Dynamical Systems · Mathematics 2013-01-18 Badal Joshi

Many reaction networks arising in applications are multistationary, that is, they have the capacity for more than one steady state; while some networks exhibit absolute concentration robustness (ACR), which means that some species…

Dynamical Systems · Mathematics 2024-11-20 Nidhi Kaihnsa , Tung Nguyen , Anne Shiu

In the study of reaction networks and the polynomial dynamical systems that they generate, special classes of networks with important properties have been identified. These include reversible, weakly reversible}, and, more recently,…

Dynamical Systems · Mathematics 2020-07-30 David F. Anderson , James D. Brunner , Gheorghe Craciun , Matthew D. Johnston

The metabolic network of a living cell involves several hundreds or thousands of interconnected biochemical reactions. Previous research has shown that under realistic conditions only a fraction of these reactions is concurrently active in…

Molecular Networks · Quantitative Biology 2012-06-06 Joo Sang Lee , Takashi Nishikawa , Adilson E. Motter

Bistability and multistationarity are properties of reaction networks linked to switch-like responses and connected to cell memory and cell decision making. Determining whether and when a network exhibits bistability is a hard and open…

Algebraic Geometry · Mathematics 2018-12-20 Elisenda Feliu , Martin Helmer

We show that if a chemical reaction network (CRN) admits nondegenerate (resp., linearly stable) oscillation, and we add new reversible reactions involving new species to this CRN, then the new CRN so created also admits nondegenerate…

Dynamical Systems · Mathematics 2021-06-14 Murad Banaji

For reaction networks arising in systems biology, the capacity for two or more steady states, that is, multistationarity, is an important property that underlies biochemical switches. Another property receiving much attention recently is…

Probability · Mathematics 2023-01-26 Badal Joshi , Nidhi Kaihnsa , Tung D. Nguyen , Anne Shiu

We address the question of which small, bimolecular, mass action chemical reaction networks (CRNs) are capable of Andronov-Hopf bifurcation (from here on abbreviated to "Hopf bifurcation"). It is easily shown that any such network must have…

Dynamical Systems · Mathematics 2023-01-24 Murad Banaji , Balázs Boros

Networks with absolute concentration robustness (ACR) have the property that a translation of a coordinate hyperplane either contains all steady states (static ACR) or attracts all trajectories (dynamic ACR). The implication for the…

Dynamical Systems · Mathematics 2022-06-22 Badal Joshi , Gheorghe Craciun
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