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Elastic confinements are an important component of many biological systems and dictate the transport properties of suspended particles under flow. In this chapter, we review the Brownian motion of a particle moving in the vicinity of a…

Soft Condensed Matter · Physics 2022-10-28 Abdallah Daddi-Moussa-Ider , Stephan Gekle

The behaviour of elastic structures undergoing large deformations is the result of the competition between confining conditions, self-avoidance and elasticity. This combination of multiple phenomena creates a geometrical frustration that…

Soft Condensed Matter · Physics 2015-05-19 Mokhtar Adda-Bedia , Arezki Boudaoud , Laurent Boué , Stephanie Deboeuf

We study the steady plane shear flow of a dense assembly of frictional, inelastic disks using discrete simulation and prescribing the pressure and the shear rate. We show that, in the limit of rigid grains, the shear state is determined by…

Soft Condensed Matter · Physics 2009-11-11 Frederic da Cruz , Sacha Emam , Michael Prochnow , Jean-Noel Roux , Francois Chevoir

Modelling the dynamics of dense granular media is a long standing challenge and essential to many natural phenomena and technological applications. Here, we trace back puzzling experimental observation of detailed-balanced steady states to…

Soft Condensed Matter · Physics 2024-10-29 Clara C. Wanjura , Amelie Mayländer , Othmar Marti , Raphael Blumenfeld

We study the deformations of elastic filaments confined within slowly-shrinking circular boundaries, under contact forces with friction. We perform computations with a spring-lattice model that deforms like a thin inextensible filament of…

Soft Condensed Matter · Physics 2022-02-23 Silas Alben

Understanding to what extent stem cell potential is a cell-intrinsic property, or an emergent behavior coming from global tissue dynamics and geometry, is a key outstanding question of systems and stem cell biology. Here, we propose a…

When stressed sufficiently, solid materials yield and deform plastically via reorganization of microscopic constituents. Indeed, it is possible to alter the micro-structure of materials by judicious application of stress, an empirical pro-…

Soft Condensed Matter · Physics 2021-08-09 K. L. Galloway , Xiaoguang Ma , Nathan C. Keim , Douglas J. Jerolmack , Arjun G. Yodh , Paulo E. Arratia

Spatiotemporal patterns in multicellular systems are important to understanding tissue dynamics, for instance, during embryonic development and disease. Here, we use a multiphase field model to study numerically the behavior of a…

Soft Condensed Matter · Physics 2025-02-13 Michael Chiang , Austin Hopkins , Benjamin Loewe , M. Cristina Marchetti , Davide Marenduzzo

This article explores the hysteretic behavior and the damping features of sheared granular media using discrete element method (DEM) simulations. We consider polydisperse non-cohesive frictional spherical particles, enclosed in a container…

Soft Condensed Matter · Physics 2025-10-07 A. Faulconnier , S. Job , J. Brocail , N. Peyret , J. -L. Dion

Adaptive control in biological systems, such as intestinal immunity, remains poorly understood despite detailed knowledge of underlying regulatory networks. We propose an alternative framework based on stochastic martingale turnover, in…

Adaptation and Self-Organizing Systems · Physics 2026-05-01 Tomoyuki Yamaguchi

It was discovered recently that frictional granular materials can exhibit an important mechanism for instabilities, i.e the appearance of pairs of complex eigenvalues in their stability matrix. The consequence is an oscillatory exponential…

Soft Condensed Matter · Physics 2019-10-09 Joyjit Chattoraj , Oleg Gendelman , Massimo Pica Ciamarra , Itamar Procaccia

The static as well as the dynamic behaviour of granular material are determined by dynamic {\it and} static friction. There are well known methods to include static friction in molecular dynamics simulations using scarcely understood…

High Energy Physics - Lattice · Physics 2009-10-22 T. Poeschel , V. Buchholtz

We use continuum simulations to study the impact of friction on the ordering of defects in an active nematic. Even in a frictionless system, +1/2 defects tend to align side-by-side and orient antiparallel reflecting their propensity to…

Soft Condensed Matter · Physics 2020-11-25 Kristian Thijssen , Mehrana R. Nejad , Julia M. Yeomans

We study the response to shear deformations of packings of long spherocylindrical particles that interact via frictional forces with friction coefficient $\mu$. The packings are produced and deformed with the help of molecular dynamics…

Soft Condensed Matter · Physics 2021-06-02 Claus Heussinger

Structural organization and correlations are studied in very large packings of equally sized acrylic spheres, reconstructed in three-dimensions by means of X-ray computed tomography. A novel technique, devised to analyze correlations among…

Soft Condensed Matter · Physics 2007-09-19 Tomaso Aste

We simulate dense assemblies of frictional spherical grains in steady shear flow under controlled normal stress $P$ in the presence of a small amount of an interstitial liquid, which gives rise to capillary menisci, assumed isolated…

Soft Condensed Matter · Physics 2015-08-12 Saeed Khamseh , Jean-Noël Roux , François Chevoir

Understanding the phase behavior of mixtures with many components is important in many contexts, including as a key step toward a physics-based description of intracellular compartmentalization. Here, we study the instabilities of a mixture…

Statistical Mechanics · Physics 2023-08-16 Filipe C Thewes , Matthias Krüger , Peter Sollich

Dispersal is an important strategy that allows organisms to locate and exploit favorable habitats. The question arises: given competition in a spatially heterogeneous landscape, what is the optimal rate of dispersal? Continuous population…

Populations and Evolution · Quantitative Biology 2010-02-05 Jack N. Waddell , Leonard M. Sander , Charles R. Doering

The shear-banding instability in quasi-statically driven bulk metallic glasses emerges from collective dynamics, mediated by shear transformation zones and associated non-local elastic interactions. It is also phenomenologically known that…

Shear thickening of particle suspensions is characterized by a transition between lubricated and frictional contacts between the particles. Using 3D numerical simulations, we study how the inter-particle friction coefficient influences the…

Soft Condensed Matter · Physics 2020-01-08 Vishnu Sivadasan , Eric Lorenz , Alfons G. Hoekstra , Daniel Bonn