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Single-cell RNA sequencing (scRNA-seq) reveals cell heterogeneity, with cell clustering playing a key role in identifying cell types and marker genes. Recent advances, especially graph neural networks (GNNs)-based methods, have…

Genomics · Quantitative Biology 2025-10-03 Ping Xu , Zhiyuan Ning , Pengjiang Li , Wenhao Liu , Pengyang Wang , Jiaxu Cui , Yuanchun Zhou , Pengfei Wang

The self-expressive property of data points, i.e., each data point can be linearly represented by the other data points in the same subspace, has proven effective in leading subspace clustering methods. Most self-expressive methods usually…

Computer Vision and Pattern Recognition · Computer Science 2019-09-24 Jun Xu , Mengyang Yu , Ling Shao , Wangmeng Zuo , Deyu Meng , Lei Zhang , David Zhang

Clustering images according to their acquisition devices is a well-known problem in multimedia forensics, which is typically faced by means of camera Sensor Pattern Noise (SPN). Such an issue is challenging since SPN is a noise-like signal,…

Computer Vision and Pattern Recognition · Computer Science 2018-12-03 Quoc-Tin Phan , Giulia Boato , Francesco G. B. De Natale

Kernel segmentation aims at partitioning a data sequence into several non-overlapping segments that may have nonlinear and complex structures. In general, it is formulated as a discrete optimization problem with combinatorial constraints. A…

Machine Learning · Computer Science 2022-06-23 Tung Doan , Atsuhiro Takasu

Low-rank optimization problems with sparse simplex constraints involve variables that must satisfy nonnegativity, sparsity, and sum-to-1 conditions, making their optimization particularly challenging due to the interplay between low-rank…

Optimization and Control · Mathematics 2026-03-24 Flavia Esposito , Andersen Ang

Mixed membership community detection is a challenge problem in network analysis. To estimate the memberships and study the impact of regularized spectral clustering under the mixed membership stochastic block (MMSB) model, this article…

Methodology · Statistics 2021-08-29 Huan Qing , Jingli Wang

Spectral clustering has found extensive use in many areas. Most traditional spectral clustering algorithms work in three separate steps: similarity graph construction; continuous labels learning; discretizing the learned labels by k-means…

Machine Learning · Computer Science 2017-11-15 Zhao Kang , Chong Peng , Qiang Cheng , Zenglin Xu

Motivation: Structural heterogeneity in single-particle cryo-electron microscopy (cryo-EM) data represents a major challenge for high-resolution structure determination. Unsupervised classification may serve as the first step in the…

Data Analysis, Statistics and Probability · Physics 2017-11-01 Jiayi Wu , Yong-Bei Ma , Charles Congdon , Bevin Brett , Shuobing Chen , Qi Ouyang , Youdong Mao

Sparse graphs built by sparse representation has been demonstrated to be effective in clustering high-dimensional data. Albeit the compelling empirical performance, the vanilla sparse graph ignores the geometric information of the data by…

Machine Learning · Computer Science 2024-09-26 Dongfang Sun , Yingzhen Yang

In this paper, we develop a method for unsupervised clustering of two-way (matrix) data by combining two recent innovations from different fields: the Sparse Subspace Clustering (SSC) algorithm [10], which groups points coming from a union…

Machine Learning · Computer Science 2015-02-24 Eric Kernfeld , Shuchin Aeron , Misha Kilmer

We propose a novel adaptive empirical Bayesian method for sparse deep learning, where the sparsity is ensured via a class of self-adaptive spike-and-slab priors. The proposed method works by alternatively sampling from an adaptive…

Machine Learning · Statistics 2020-04-15 Wei Deng , Xiao Zhang , Faming Liang , Guang Lin

Subspace clustering aims to group data points into multiple clusters of which each corresponds to one subspace. Most existing subspace clustering approaches assume that input data lie on linear subspaces. In practice, however, this…

Computer Vision and Pattern Recognition · Computer Science 2020-03-30 Liangli Zhen , Dezhong Peng , Wei Wang , Xin Yao

Spectral clustering has become a popular technique due to its high performance in many contexts. It comprises three main steps: create a similarity graph between N objects to cluster, compute the first k eigenvectors of its Laplacian matrix…

Data Structures and Algorithms · Computer Science 2016-05-24 Nicolas Tremblay , Gilles Puy , Remi Gribonval , Pierre Vandergheynst

Spectral clustering is a popular clustering method. It first maps data into the spectral embedding space and then uses Kmeans to find clusters. However, the two decoupled steps prohibit joint optimization for the optimal solution. In…

Machine Learning · Computer Science 2024-12-17 Wengang Guo , Wei Ye

Optimization on the Stiefel manifold or with orthogonality constraints is an important problem in many signal processing and data analysis applications such as Sparse Principal Component Analysis (SPCA). Algorithms such as the Riemannian…

Optimization and Control · Mathematics 2024-11-12 Tarmizi Adam

Sparse learning has been shown to be effective in solving many real-world problems. Finding sparse representations is a fundamentally important topic in many fields of science including signal processing, computer vision, genome study and…

Computer Vision and Pattern Recognition · Computer Science 2018-07-30 Jun Cheng

Given a union of non-linear manifolds, non-linear subspace clustering or manifold clustering aims to cluster data points based on manifold structures and also learn to parameterize each manifold as a linear subspace in a feature space. Deep…

Machine Learning · Computer Science 2022-01-26 Zengyi Li , Yubei Chen , Yann LeCun , Friedrich T. Sommer

Spectral clustering is one of the most popular methods for community detection in graphs. A key step in spectral clustering algorithms is the eigen decomposition of the $n{\times}n$ graph Laplacian matrix to extract its $k$ leading…

Machine Learning · Statistics 2018-09-10 Muni Sreenivas Pydi , Ambedkar Dukkipati

Cell recognition is a fundamental task in digital histopathology image analysis. Point-based cell recognition (PCR) methods normally require a vast number of annotations, which is extremely costly, time-consuming and labor-intensive.…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Zhongyi Shui , Yizhi Zhao , Sunyi Zheng , Yunlong Zhang , Honglin Li , Shichuan Zhang , Xiaoxuan Yu , Chenglu Zhu , Lin Yang

In solving hard computational problems, semidefinite program (SDP) relaxations often play an important role because they come with a guarantee of optimality. Here, we focus on a popular semidefinite relaxation of K-means clustering which…

Machine Learning · Computer Science 2018-09-07 Mariano Tepper , Anirvan M. Sengupta , Dmitri Chklovskii
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