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Recent advances in large language models (LLMs) have shown potential in clinical text summarization, but their ability to handle long patient trajectories with multi-modal data spread across time remains underexplored. This study…

Computation and Language · Computer Science 2025-09-08 Maya Kruse , Shiyue Hu , Nicholas Derby , Yifu Wu , Samantha Stonbraker , Bingsheng Yao , Dakuo Wang , Elizabeth Goldberg , Yanjun Gao

In the dynamic hospital setting, decision support can be a valuable tool for improving patient outcomes. Data-driven inference of future outcomes is challenging in this dynamic setting, where long sequences such as laboratory tests and…

Quantitative Methods · Quantitative Biology 2024-04-25 Alan D. Kaplan , Priyadip Ray , John D. Greene , Vincent X. Liu

Online health communities are a valuable source of information for patients and physicians. However, such user-generated resources are often plagued by inaccuracies and misinformation. In this work we propose a method for automatically…

Artificial Intelligence · Computer Science 2017-05-09 Subhabrata Mukherjee , Gerhard Weikum , Cristian Danescu-Niculescu-Mizil

Most dialogue-based electronic medical record (EMR) systems still behave as passive pipelines: transcribe speech, extract information, and generate the final note after the consultation. That design improves documentation efficiency, but it…

Computation and Language · Computer Science 2026-04-16 Zhenhai Pan , Yan Liu , Jia You

Patient similarity assessment, which identifies patients similar to a given patient, can help improve medical care. The assessment can be performed using Electronic Medical Records (EMRs). Patient similarity measurement requires converting…

Information Retrieval · Computer Science 2022-09-20 Hoda Memarzadeh , Nasser Ghadiri , Matthias Samwald , Maryam Lotfi Shahreza

Recent advances in Automatic Speech Recognition (ASR) have made it possible to reliably produce automatic transcripts of clinician-patient conversations. However, access to clinical datasets is heavily restricted due to patient privacy,…

Computation and Language · Computer Science 2022-04-04 Alex Papadopoulos Korfiatis , Francesco Moramarco , Radmila Sarac , Aleksandar Savkov

This paper proposes a medical text summarization method based on LongFormer, aimed at addressing the challenges faced by existing models when processing long medical texts. Traditional summarization methods are often limited by short-term…

Computation and Language · Computer Science 2025-03-11 Dan Sun , Jacky He , Hanlu Zhang , Zhen Qi , Hongye Zheng , Xiaokai Wang

High-quality and carefully curated data is a cornerstone of training medical large language models, as it directly impacts both generalization and robustness to unseen clinical tasks. We investigate strategies for training and data curation…

Artificial Intelligence · Computer Science 2025-12-01 Timothy Ossowski , Sheng Zhang , Qianchu Liu , Guanghui Qin , Reuben Tan , Tristan Naumann , Junjie Hu , Hoifung Poon

The automation of the medical evidence acquisition and diagnosis process has recently attracted increasing attention in order to reduce the workload of doctors and democratize access to medical care. However, most works proposed in the…

Computation and Language · Computer Science 2022-10-14 Arsene Fansi Tchango , Rishab Goel , Julien Martel , Zhi Wen , Gaetan Marceau Caron , Joumana Ghosn

We present the first human-annotated dialogue-based relation extraction (RE) dataset DialogRE, aiming to support the prediction of relation(s) between two arguments that appear in a dialogue. We further offer DialogRE as a platform for…

Computation and Language · Computer Science 2020-04-20 Dian Yu , Kai Sun , Claire Cardie , Dong Yu

Automated summarization of clinical texts can reduce the burden of medical professionals. "Discharge summaries" are one promising application of the summarization, because they can be generated from daily inpatient records. Our preliminary…

Computation and Language · Computer Science 2022-12-21 Kenichiro Ando , Takashi Okumura , Mamoru Komachi , Hiromasa Horiguchi , Yuji Matsumoto

In this work, we present a novel technique to improve the quality of draft clinical notes for physicians. This technique is concentrated on the ability to model implicit physician conversation styles and note preferences. We also introduce…

Computation and Language · Computer Science 2024-08-08 Nathan Brake , Thomas Schaaf

Electronic health records (EHRs) are long, noisy, and often redundant, posing a major challenge for the clinicians who must navigate them. Large language models (LLMs) offer a promising solution for extracting and reasoning over this…

Computation and Language · Computer Science 2025-08-21 Skatje Myers , Dmitriy Dligach , Timothy A. Miller , Samantha Barr , Yanjun Gao , Matthew Churpek , Anoop Mayampurath , Majid Afshar

Our goal is to build classification models using a combination of free-text and structured data. To do this, we represent structured data by text sentences, DataWords, so that similar data items are mapped into the same sentence. This…

Machine Learning · Computer Science 2022-02-18 Stephen I. Gallant , Mirza Nasir Hossain

In clinical research and clinical decision-making, it is important to know if a study changes or only supports the current standards of care for specific disease management. We define such a change as transformative and a support as…

Computation and Language · Computer Science 2021-12-28 Xuanyu Shi , Jian Du

The effective extraction of ranked disease-symptom relationships is a critical component in various medical tasks, including computer-assisted medical diagnosis or the discovery of unexpected associations between diseases. While existing…

Information Retrieval · Computer Science 2020-01-16 Markus Zlabinger , Sebastian Hofstätter , Navid Rekabsaz , Allan Hanbury

Understanding and extracting of information from large documents, such as business opportunities, academic articles, medical documents and technical reports, poses challenges not present in short documents. Such large documents may be…

Computation and Language · Computer Science 2019-10-10 Muhammad Mahbubur Rahman , Tim Finin

RST-style discourse parsing plays a vital role in many NLP tasks, revealing the underlying semantic/pragmatic structure of potentially complex and diverse documents. Despite its importance, one of the most prevailing limitations in modern…

Computation and Language · Computer Science 2021-12-14 Patrick Huber , Linzi Xing , Giuseppe Carenini

Objective: The majority of detailed patient information in real-world data (RWD) is only consistently available in free-text clinical documents. Manual curation is expensive and time-consuming. Developing natural language processing (NLP)…

In decision-making conversations, experts must navigate complex choices and make on-the-spot decisions while engaged in conversation. Although extensive historical data often exists, the real-time nature of these scenarios makes it…

Human-Computer Interaction · Computer Science 2025-07-15 Mohammad Abolnejadian , Shakiba Amirshahi , Matthew Brehmer , Anamaria Crisan