Related papers: Update Query Time Trade-off for dynamic Suffix Arr…
The problem of storing a set of strings --- a string dictionary --- in compact form appears naturally in many cases. While classically it has represented a small part of the whole data to be processed (e.g., for Natural Language processing…
We present a dynamic data structure that maintains a tree decomposition of width at most $9k+8$ of a dynamic graph with treewidth at most $k$, which is updated by edge insertions and deletions. The amortized update time of our data…
The size of the \textit{smallest suffixient set} of positions of a string recently emerged as a new measure of string \textit{repetitiveness} -- a measure reflecting how much of repetitive content the string contains. We study how to…
The classic string indexing problem is to preprocess a string $S$ into a compact data structure that supports efficient subsequent pattern matching queries, that is, given a pattern string $P$, report all occurrences of $P$ within $S$. In…
A choice dictionary is a data structure that can be initialized with a parameter $n\in\{1,2,\ldots\}$ and subsequently maintains an initially empty subset $S$ of $\{1,\ldots,n\}$ under insertion, deletion, membership queries and an…
Given a $d$-dimensional array $A$, an update operation adds a given constant $C$ to each element within a continuous sub-array of $A$. A query operation computes the sum of all the elements within a continuous sub-array of $A$. The…
We introduce data structures answering queries concerning the occurrences of patterns from a given dictionary $\mathcal{D}$ in fragments of a given string $T$ of length $n$. The dictionary is internal in the sense that each pattern in…
In recent years, RDF has gained popularity as a format for the standardized publication and exchange of information in the Web of Data. In this paper we introduce RDFCSA, a data structure that is able to self-index an RDF dataset in small…
Distributed systems often serve dynamic workloads and resource demands evolve over time. Such a temporal behavior stands in contrast to the static and demand-oblivious nature of most data structures used by these systems. In this paper, we…
In this paper we describe a dynamic data structure that answers one-dimensional stabbing-max queries in optimal $O(\log n/\log\log n)$ time. Our data structure uses linear space and supports insertions and deletions in $O(\log n)$ and…
Event suffix and remaining time prediction are sequence to sequence learning tasks. They have wide applications in different areas such as economics, digital health, business process management and IT infrastructure monitoring. Timestamped…
We introduce a notion for hierarchical graph clustering which we call the expander hierarchy and show a fully dynamic algorithm for maintaining such a hierarchy on a graph with $n$ vertices undergoing edge insertions and deletions using…
In this paper, a new and novel data structure is proposed to dynamically insert and delete segments. Unlike the standard segment trees[3], the proposed data structure permits insertion of a segment with interval range beyond the interval…
Temporal graphs represent interactions between entities over time. Deciding whether entities can reach each other through temporal paths is useful for various applications such as in communication networks and epidemiology. Previous works…
A suffix tree is able to efficiently locate a pattern in an indexed string, but not in general the most recent copy of the pattern in an online stream, which is desirable in some applications. We study the most general version of the…
String matching is the problem of finding all the occurrences of a pattern in a text. It has been intensively studied and the Boyer-Moore string matching algorithm is probably one of the most famous solution to this problem. This algorithm…
Let S be a finite, ordered alphabet, and let x = x_1 x_2 ... x_n be a string over S. A "secondary index" for x answers alphabet range queries of the form: Given a range [a_l,a_r] over S, return the set I_{[a_l;a_r]} = {i |x_i \in [a_l;…
We present several results about position heaps, a relatively new alternative to suffix trees and suffix arrays. First, we show that, if we limit the maximum length of patterns to be sought, then we can also limit the height of the heap and…
Similarity search is a fundamental operation for analyzing data series (DS), which are ordered sequences of real values. To enhance efficiency, summarization techniques are employed that reduce the dimensionality of DS. SAX-based approaches…
Suffix trees have recently become very successful data structures in handling large data sequences such as DNA or Protein sequences. Consequently parallel architectures have become ubiquitous. We present a novel alphabet-dependent parallel…