Related papers: Root estimation in Galton-Watson trees
We consider a model of random tree growth, where at each time unit a new vertex is added and attached to an already existing vertex chosen at random. The probability with which a vertex with degree $k$ is chosen is proportional to $w(k)$,…
We consider a generalized Derrida-Retaux model on a Galton-Watson tree with a geometric offspring distribution. For a class of recursive systems, including the Derrida-Retaux model with either a geometric or exponential initial…
We consider the problem of detecting the source of a rumor which has spread in a network using only observations about which set of nodes are infected with the rumor and with no information as to \emph{when} these nodes became infected. In…
Tree-based networks are a class of phylogenetic networks that attempt to formally capture what is meant by "tree-like" evolution. A given non-tree-based phylogenetic network, however, might appear to be very close to being tree-based, or…
We analyze the trade-off between model complexity and accuracy for random forests by breaking the trees up into individual classification rules and selecting a subset of them. We show experimentally that already a few rules are sufficient…
In this paper, we redesign and simplify an algorithm due to Remy et al. for the generation of rooted planar trees that satisfies a given partition of degrees. This new version is now optimal in terms of random bit complexity, up to a…
Given a finite typed rooted tree $T$ with $n$ vertices, the {\em empirical subtree measure} is the uniform measure on the $n$ typed subtrees of $T$ formed by taking all descendants of a single vertex. We prove a large deviation principle in…
In [1] a detailed analysis was given of the large-time asymptotics of the total mass of the solution to the parabolic Anderson model on a supercritical Galton-Watson random tree with an i.i.d. random potential whose marginal distribution is…
An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of…
We consider planar rooted random trees whose distribution is even for fixed height $h$ and size $N$ and whose height dependence is of exponential form $e^{-\mu h}$. Defining the total weight for such trees of fixed size to be $Z^{(\mu)}_N$,…
In this paper, we provide a polynomial time algorithm to calculate the probability of a {\it ranked} gene tree topology for a given species tree, where a ranked tree topology is a tree topology with the internal vertices being ordered. The…
We consider maximum rooted tree extension counts in random graphs, i.e., we consider M_n = \max_v X_v where X_v counts the number of copies of a given tree in G_{n,p} rooted at vertex v. We determine the asymptotics of M_n when the random…
One approach to estimating a species tree from a collection of gene trees is to first estimate probabilities of clades from the gene trees, and then to construct the species tree from the estimated clade probabilities. While a greedy…
In this paper we address the problem of testing whether two observed trees $(t,t')$ are sampled either independently or from a joint distribution under which they are correlated. This problem, which we refer to as correlation detection in…
Connected acyclic graphs (trees) are data objects that hierarchically organize categories. Collections of trees arise in a diverse variety of fields, including evolutionary biology, public health, machine learning, social sciences and…
We consider the minimum spanning tree problem with predictions, using the weight-arrival model, i.e., the graph is given, together with predictions for the weights of all edges. Then the actual weights arrive one at a time and an…
A treedepth decomposition of an undirected graph $G$ is a rooted forest $F$ on the vertex set of $G$ such that every edge $uv\in E(G)$ is in ancestor-descendant relationship in $F$. Given a weight function $w\colon V(G)\rightarrow…
We provide simplified proofs for the asymptotic distribution of the number of cuts required to cut down a Galton-Watson tree with critical, finite-variance offspring distribution, conditioned to have total progeny $n$. Our proof is based on…
We explore the relationship between (non-planar) rooted trees and free trees, i.e. without root. We give in particular, for non-rooted trees, a substitute for the Lie bracket given by the antisymmetrization of the pre-Lie product.
Neutral macroevolutionary models, such as the Yule model, give rise to a probability distribution on the set of discrete rooted binary trees over a given leaf set. Such models can provide a signal as to the approximate location of the root…