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When analysing gene expression time series data an often overlooked but crucial aspect of the model is that the regulatory network structure may change over time. Whilst some approaches have addressed this problem previously in the…

Molecular Networks · Quantitative Biology 2012-03-05 Thomas Thorne , Michael P. H Stumpf

Mechanistic modelling of animal movement is often formulated in discrete time despite problems with scale invariance, such as handling irregularly timed observations. A natural solution is to formulate in continuous time, yet uptake of this…

Applications · Statistics 2017-05-19 Alison Parton , Paul G. Blackwell

Markov chains are simple yet powerful mathematical structures to model temporally dependent processes. They generally assume stationary data, i.e., fixed transition probabilities between observations/states. However, live, real-world…

Machine Learning · Computer Science 2024-11-27 Kutalmış Coşkun , Borahan Tümer , Bjarne C. Hiller , Martin Becker

We introduce for the first time a neural-certificate framework for continuous-time stochastic dynamical systems. Autonomous learning systems in the physical world demand continuous-time reasoning, yet existing learnable certificates for…

Systems and Control · Electrical Eng. & Systems 2025-09-01 Grigory Neustroev , Mirco Giacobbe , Anna Lukina

Inferring time-varying networks is important to understand the development and evolution of interactions over time. However, the vast majority of currently used models assume direct measurements of node states, which are often difficult to…

Applications · Statistics 2014-05-06 Xin Wang , Ke Yuan , Christoph Hellmayr , Wei Liu , Florian Markowetz

Temporal graph neural network has recently received significant attention due to its wide application scenarios, such as bioinformatics, knowledge graphs, and social networks. There are some temporal graph neural networks that achieve…

Machine Learning · Computer Science 2023-01-23 Mingyi Liu , Zhiying Tu , Xiaofei Xu , Zhongjie Wang

Models for cross-sectional network data have become increasingly well-developed in recent decades, and are widely used. This has led to a growing interest in the connection between such cross-sectional models and the behavioral processes…

Social and Information Networks · Computer Science 2026-05-05 Carter T. Butts , Alexander Murray-Watters

Sequence prediction and classification are ubiquitous and challenging problems in machine learning that can require identifying complex dependencies between temporally distant inputs. Recurrent Neural Networks (RNNs) have the ability, in…

Neural and Evolutionary Computing · Computer Science 2014-02-17 Jan Koutník , Klaus Greff , Faustino Gomez , Jürgen Schmidhuber

We consider the problem of bounding mean first passage times for a class of continuous-time Markov chains that captures stochastic interactions between groups of identical agents. The quantitative analysis of such probabilistic population…

Systems and Control · Electrical Eng. & Systems 2020-04-07 Michael Backenköhler , Luca Bortolussi , Verena Wolf

We present a flexible Bayesian semiparametric mixed model for longitudinal data analysis in the presence of potentially high-dimensional categorical covariates. Building on a novel hidden Markov tensor decomposition technique, our proposed…

Methodology · Statistics 2022-08-05 Giorgio Paulon , Peter Müller , Abhra Sarkar

The stochastic block model (SBM) is a flexible probabilistic tool that can be used to model interactions between clusters of nodes in a network. However, it does not account for interactions of time varying intensity between clusters. The…

Machine Learning · Statistics 2017-07-11 Marco Corneli , Pierre Latouche , Fabrice Rossi

This paper reviews recent advances in Bayesian nonparametric techniques for constructing and performing inference in infinite hidden Markov models. We focus on variants of Bayesian nonparametric hidden Markov models that enhance a…

Methodology · Statistics 2014-07-02 Jonathan H. Huggins , Frank Wood

We propose a general framework for modelling network data that is designed to describe aspects of non-exchangeable networks. Conditional on latent (unobserved) variables, the edges of the network are generated by their finite growth history…

Statistics Theory · Mathematics 2020-07-29 Weichi Wu , Sofia Olhede , Patrick Wolfe

Sampling the parameters of high-dimensional Continuous Time Markov Chains (CTMC) is a challenging problem with important applications in many fields of applied statistics. In this work a recently proposed type of non-reversible…

Machine Learning · Statistics 2021-06-01 Tingting Zhao , Alexandre Bouchard-Côté

In the context of Markov decision processes running in continuous time, one of the most intriguing challenges is the efficient approximation of finite horizon reachability objectives. A multitude of sophisticated model checking algorithms…

Systems and Control · Computer Science 2015-08-03 Yuliya Butkova , Hassan Hatefi , Holger Hermanns , Jan Krcal

We present a generative model for representing and reasoning about the relationships among events in continuous time. We apply the model to the domain of networked and distributed computing environments where we fit the parameters of the…

Artificial Intelligence · Computer Science 2012-06-18 Aleksandr Simma , Moises Goldszmidt , John MacCormick , Paul Barham , Richard Black , Rebecca Isaacs , Richard Mortier

Changes in the timescales at which complex systems evolve are essential to predicting critical transitions and catastrophic failures. Disentangling the timescales of the dynamics governing complex systems remains a key challenge. With this…

Methodology · Statistics 2024-03-11 Giona Casiraghi , Georges Andres

We introduce a model of adaptive temporal networks whose evolution is regulated by an interplay between node activity and dynamic exchange of information through links. We study the model by using a master equation approach. Starting from a…

Physics and Society · Physics 2016-04-18 Takaaki Aoki , Luis E. C. Rocha , Thilo Gross

Real-life statistical samples are often plagued by selection bias, which complicates drawing conclusions about the general population. When learning causal relationships between the variables is of interest, the sample may be assumed to be…

Statistics Theory · Mathematics 2018-11-15 Angelos P. Armen , Robin J. Evans

Time-varying graphs are a useful model for networks with dynamic connectivity such as vehicular networks, yet, despite their great modeling power, many important features of time-varying graphs are still poorly understood. In this paper, we…

Networking and Internet Architecture · Computer Science 2016-01-27 Qingkai Liang , Eytan Modiano