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Related papers: A Note on Over-Smoothing for Graph Neural Networks

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In this work, we propose to train a graph neural network via resampling from a graphon estimate obtained from the underlying network data. More specifically, the graphon or the link probability matrix of the underlying network is first…

Machine Learning · Computer Science 2021-09-07 Ziqing Hu , Yihao Fang , Lizhen Lin

In this work, we generalize the ideas of Kaiming initialization to Graph Neural Networks (GNNs) and propose a new scheme (G-Init) that reduces oversmoothing, leading to very good results in node and graph classification tasks. GNNs are…

Machine Learning · Computer Science 2024-11-01 Dimitrios Kelesis , Dimitris Fotakis , Georgios Paliouras

Graph Neural Networks (graph NNs) are a promising deep learning approach for analyzing graph-structured data. However, it is known that they do not improve (or sometimes worsen) their predictive performance as we pile up many layers and add…

Machine Learning · Computer Science 2021-01-07 Kenta Oono , Taiji Suzuki

Graph neural networks (GNNs) are one of the most popular research topics for deep learning. GNN methods typically have been designed on top of the graph signal processing theory. In particular, diffusion equations have been widely used for…

Machine Learning · Computer Science 2023-06-16 Jeongwhan Choi , Seoyoung Hong , Noseong Park , Sung-Bae Cho

Many improvements on GNNs can be deemed as operations on the spectrum of the underlying graph matrix, which motivates us to directly study the characteristics of the spectrum and their effects on GNN performance. By generalizing most…

Machine Learning · Computer Science 2022-06-22 Mingqi Yang , Yanming Shen , Rui Li , Heng Qi , Qiang Zhang , Baocai Yin

Graph Neural Networks (GNNs) are powerful deep learning methods for Non-Euclidean data. Popular GNNs are message-passing algorithms (MPNNs) that aggregate and combine signals in a local graph neighborhood. However, shallow MPNNs tend to…

Machine Learning · Statistics 2022-11-08 Ningyuan Huang , Soledad Villar , Carey E. Priebe , Da Zheng , Chengyue Huang , Lin Yang , Vladimir Braverman

Graph convolutional networks (GCNs) have shown promising results in processing graph data by extracting structure-aware features. This gave rise to extensive work in geometric deep learning, focusing on designing network architectures that…

Machine Learning · Computer Science 2022-01-20 Yimeng Min , Frederik Wenkel , Guy Wolf

Despite much research, Graph Neural Networks (GNNs) still do not display the favorable scaling properties of other deep neural networks such as Convolutional Neural Networks and Transformers. Previous work has identified issues such as…

Machine Learning · Computer Science 2023-12-19 Ameen Ali , Hakan Cevikalp , Lior Wolf

\emph{Over-fitting} and \emph{over-smoothing} are two main obstacles of developing deep Graph Convolutional Networks (GCNs) for node classification. In particular, over-fitting weakens the generalization ability on small dataset, while…

Machine Learning · Computer Science 2020-03-13 Yu Rong , Wenbing Huang , Tingyang Xu , Junzhou Huang

Physics-informed Graph Neural Networks have achieved remarkable performance in learning through graph-structured data by mitigating common GNN challenges such as over-smoothing, over-squashing, and heterophily adaption. Despite these…

Machine Learning · Computer Science 2024-06-13 Dai Shi , Andi Han , Lequan Lin , Yi Guo , Zhiyong Wang , Junbin Gao

Oversmoothing is a common phenomenon observed in graph neural networks (GNNs), in which an increase in the network depth leads to a deterioration in their performance. Graph contrastive learning (GCL) is emerging as a promising way of…

Machine Learning · Computer Science 2024-02-26 Jintang Li , Wangbin Sun , Ruofan Wu , Yuchang Zhu , Liang Chen , Zibin Zheng

Graph Neural Networks (GNNs) have emerged as a cornerstone of deep learning, with most existing methods rooted in graph signal processing and diffusion equations to model message passing. However, these approaches inherently suffer from the…

Machine Learning · Computer Science 2026-05-26 Zexing Zhao , Guangsi Shi , Yu Gong , Tianyu Wang , Shirui Pan , Hongye Cheng , Yuxiao Li

Graph Neural Networks (GNNs) have established themselves as the preferred methodology in a multitude of domains, ranging from computer vision to computational biology, especially in contexts where data inherently conform to graph…

Machine Learning · Computer Science 2024-04-05 Yifan Qu , Oliver Krzysik , Hans De Sterck , Omer Ege Kara

Continuous graph neural models based on differential equations have expanded the architecture of graph neural networks (GNNs). Due to the connection between graph diffusion and message passing, diffusion-based models have been widely…

Machine Learning · Computer Science 2024-04-01 Kaiyuan Cui , Xinyan Wang , Zicheng Zhang , Weichen Zhao

Current Graph Neural Networks (GNNs) suffer from the over-smoothing problem, which results in indistinguishable node representations and low model performance with more GNN layers. Many methods have been put forward to tackle this problem…

Machine Learning · Computer Science 2022-10-25 Xinshun Feng , Herun Wan , Shangbin Feng , Hongrui Wang , Jun Zhou , Qinghua Zheng , Minnan Luo

Modern neural networks have shown promise for solving partial differential equations over surfaces, often by discretizing the surface as a mesh and learning with a mesh-aware graph neural network. However, graph neural networks suffer from…

Machine Learning · Computer Science 2026-05-13 Edward Berman , Luisa Li , Jung Yeon Park , Robin Walters

A graph convolutional network (GCN) employs a graph filtering kernel tailored for data with irregular structures. However, simply stacking more GCN layers does not improve performance; instead, the output converges to an uninformative…

Machine Learning · Computer Science 2022-11-04 Jin Zeng , Yang Liu , Gene Cheung , Wei Hu

Graph Neural Networks (GNNs) learn node representations through iterative network-based message-passing. While powerful, deep GNNs suffer from oversmoothing, where node features converge to a homogeneous, non-informative state. We re-frame…

Machine Learning · Computer Science 2026-02-18 Erkan Turan , Gaspard Abel , Maysam Behmanesh , Emery Pierson , Maks Ovsjanikov

Graph Neural Networks (GNNs) have succeeded in various computer science applications, yet deep GNNs underperform their shallow counterparts despite deep learning's success in other domains. Over-smoothing and over-squashing are key…

Machine Learning · Computer Science 2023-08-14 Jhony H. Giraldo , Konstantinos Skianis , Thierry Bouwmans , Fragkiskos D. Malliaros

Our study reveals new theoretical insights into over-smoothing and feature over-correlation in graph neural networks. Specifically, we demonstrate that with increased depth, node representations become dominated by a low-dimensional…

Machine Learning · Computer Science 2024-09-19 Andreas Roth , Thomas Liebig