Related papers: The Look-and-Say The Biggest Sequence Eventually C…
This paper provides an upper bound for several subsets of maximal repeats and maximal pairs in compressed strings and also presents a formerly unknown relationship between maximal pairs and the run-length Burrows-Wheeler transform. This…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…
We introduce a class of stochastic integer sequences. In these sequences, every element is a sum of two previous elements, at least one of which is chosen randomly. The interplay between randomness and memory underlying these sequences…
Let us call a sequence of numbers heapable if they can be sequentially inserted to form a binary tree with the heap property, where each insertion subsequent to the first occurs at a leaf of the tree, i.e. below a previously placed number.…
Recently Kauers, Koutschan and Spahn announced a significant increase in the length of the so-called {\em gerrymander sequence}, given as A348456 in the OEIS, extending the sequence from 3 terms to 7 terms. We give a further extension to 11…
The distributions of the $m$-th longest runs of multivariate random sequences are considered. For random sequences made up of $k$ kinds of letters, the lengths of the runs are sorted in two ways to give two definitions of run length…
The Binary Two-Up Sequence is the lexicographically earliest sequence of distinct nonnegative integers with the property that the binary expansion of the n-th term has no 1-bits in common with any of the previous floor(n/2) terms. We show…
This paper is devoted to the study of the log-convexity of combinatorial sequences. We show that the log-convexity is preserved under componentwise sum, under binomial convolution, and by the linear transformations given by the matrices of…
Given several number sequences, determining the longest common subsequence is a classical problem in computer science. This problem has applications in bioinformatics, especially determining transposable genes. Nevertheless, related works…
Given two sequences $A[1..n]$ and $B[1..m]$ over a totally ordered alphabet, the \emph{Longest Common Bitonic Subsequence} (LCBS) problem asks for a longest common subsequence that is strictly increasing up to a single peak element and…
We study the entropy $S$ of longest increasing subsequences (LIS), i.e., the logarithm of the number of distinct LIS. We consider two ensembles of sequences, namely random permutations of integers and sequences drawn i.i.d.\ from a limited…
The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. LCS is a central problem in stringology and finds broad applications in text compression, error-detecting codes and biological…
Longest Run Subsequence is a problem introduced recently in the context of the scaffolding phase of genome assembly (Schrinner et al., WABI 2020). The problem asks for a maximum length subsequence of a given string that contains at most one…
Sequence A000975 in the Online Encyclopedia of Integer Sequences (OEIS) starts out 1, 2, 5, 10, 21, 42, 85, ... . As of July 1, 2016, the description in the OEIS lists several characterizations of this sequence and numerous examples of…
We study numerically the distributions of the length $L$ of the longest increasing subsequence (LIS) for the two cases of random permutations and of one-dimensional random walks. Using sophisticated large-deviation algorithms, we are able…
We consider the general problem of the Longest Common Subsequence (LCS) on weighted sequences. Weighted sequences are an extension of classical strings, where in each position every letter of the alphabet may occur with some probability.…
Each connected component of a mapping $\{1,2,...,n\}\rightarrow\{1,2,...,n\}$ contains a unique cycle. The largest such component can be studied probabilistically via either a delay differential equation or an inverse Laplace transform. The…
Given a sequence of n numbers, the Maximum Consecutive Subsums Problem (MCSP) asks for the maximum consecutive sum of lengths l for each l = 1,...,n. No algorithm is known for this problem which is significantly better than the naive…
Let $(X_i)_{i \geq 1}$ and $(Y_i)_{i\geq1}$ be two independent sequences of independent identically distributed random variables taking their values in a common finite alphabet and having the same law. Let $LC_n$ be the length of the…
A linear cycle in a hypergraph $H$ is a cyclic sequence of hyperedges such that two consecutive hyperedges intersect in exactly one element and two nonconsecutive hyperedges are disjoint and $\alpha(H)$ denotes the size of a largest…