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Rooted phylogenetic networks provide a more complete representation of the ancestral relationship between species than phylogenetic trees when reticulate evolutionary processes are at play. One way to reconstruct a phylogenetic network is…
Graphs and networks provide a canonical representation of relational data, with massive network data sets becoming increasingly prevalent across a variety of scientific fields. Although tools from mathematics and computer science have been…
Networks are mathematical structures that are universally used to describe a large variety of complex systems such as the brain or the Internet. Characterizing the geometrical properties of these networks has become increasingly relevant…
The notion of treewidth, introduced by Robertson and Seymour in their seminal Graph Minors series, turned out to have tremendous impact on graph algorithmics. Many hard computational problems on graphs turn out to be efficiently solvable in…
Network models with latent geometry have been used successfully in many applications in network science and other disciplines, yet it is usually impossible to tell if a given real network is geometric, meaning if it is a typical element in…
We present a concept called the branch-depth of a connectivity function, that generalizes the tree-depth of graphs. Then we prove two theorems showing that this concept aligns closely with the notions of tree-depth and shrub-depth of graphs…
This article presents a theory for constructing hierarchical networks in such a way that the networks are guaranteed to be provably scale covariant. We first present a general sufficiency argument for obtaining scale covariance, which holds…
In 1966, Cummins introduced the "tree graph": the tree graph $\mathbf{T}(G)$ of a graph $G$ (possibly infinite) has all its spanning trees as vertices, and distinct such trees correspond to adjacent vertices if they differ in just one edge,…
Orchard and tree-child networks share an important property with phylogenetic trees: they can be completely reduced to a single node by iteratively deleting cherries and reticulated cherries. As it is the case with phylogenetic trees, the…
The structure of networks that provide optimal transport properties has been investigated in a variety of contexts. While many different formulations of this problem have been considered, it is recurrently found that optimal networks are…
Taking a Feynman categorical perspective, several key aspects of the geometry of surfaces are deduced from combinatorial constructions with graphs. This provides a direct route from combinatorics of graphs to string topology operations via…
A directed phylogenetic network is tree-child if every non-leaf vertex has a child that is not a reticulation. As a class of directed phylogenetic networks, tree-child networks are very useful from a computational perspective. For example,…
Tree-width is an invaluable tool for computational problems on graphs. But often one would like to compute on other kinds of objects (e.g. decorated graphs or even algebraic structures) where there is no known tree-width analogue. Here we…
Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…
Based on two classical notions of curvature for curves in general metric spaces, namely the Menger and Haantjes curvatures, we introduce new definitions of sectional, Ricci and scalar curvature for networks and their higher dimensional…
A non-local model describing the growth of a tree-like transportation network with given allocation rules is proposed. In this model we focus on tree like networks, and the network transports the very resource it needs to build itself. Some…
Tree-like tableaux are objects in bijection with alternative or permutation tableaux. They have been the subject of a fruitful combinatorial study for the past few years. In the present work, we define and study a new subclass of tree-like…
Network detection is an important capability in many areas of applied research in which data can be represented as a graph of entities and relationships. Oftentimes the object of interest is a relatively small subgraph in an enormous,…
We develop a statistical theory of networks. A network is a set of vertices and links given by its adjacency matrix $\c$, and the relevant statistical ensembles are defined in terms of a partition function $Z=\sum_{\c} \exp {[}-\beta \H(\c)…
A vertex of degree one in a tree is called an end vertex and a vertex of degree at least three is called a branch vertex. For a graph $G$, let $\sigma_2$ be the minimum degree sum of two nonadjacent vertices in $G$. We consider tree…