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One of the central challenges facing modern neuroscience is to explain the ability of the nervous system to coherently integrate information across distinct functional modules in the absence of a central executive. To this end Tononi et al.…

Neurons and Cognition · Quantitative Biology 2010-11-30 L. Barnett , C. L. Buckley , S. Bullock

We propose the class of galled tree-child networks which is obtained as intersection of the classes of galled networks and tree-child networks. For the latter two classes, (asymptotic) counting results and stochastic results have been…

Combinatorics · Mathematics 2024-03-06 Yu-Sheng Chang , Michael Fuchs , Guan-Ru Yu

Biomolecular networks have already found great utility in characterizing complex biological systems arising from pair-wise interactions amongst biomolecules. Here, we review how graph theoretical approaches can be applied not only for a…

Molecular Networks · Quantitative Biology 2018-12-03 Heeralal Janwa , Steven E. Massey , Julian Velev , Bud Mishra

In Francis and Steel (2015), it was shown that there exists non-trivial networks on $4$ leaves upon which the distance metric affords a metric on a tree which is not the base tree of the network. In this paper we extend this result in two…

Populations and Evolution · Quantitative Biology 2019-06-06 Michael Hendriksen

Random networks are increasingly used to analyse complex transportation networks, such as airline routes, roads and rail networks. So far, this research has been focused on describing the properties of the networks with the help of random…

Physics and Society · Physics 2017-09-19 Jürgen Hackl , Bryan T. Adey

Starting from the working hypothesis that both physics and the corresponding mathematics have to be described by means of discrete concepts on the Planck-scale, one of the many problems one has to face in this enterprise is to find the…

High Energy Physics - Theory · Physics 2010-05-12 Thomas Nowotny , Manfred Requardt

Great part of the interest in complex networks has been motivated by the presence of structured, frequently non-uniform, connectivity. Because diverse connectivity patterns tend to result in distinct network dynamics, and also because they…

Disordered Systems and Neural Networks · Physics 2009-11-13 Paulino R. Villas Boas , Francisco A. Rodrigues , Gonzalo Travieso , Luciano da F. Costa

The VPN Tree Routing Conjecture is a conjecture about the Virtual Private Network Design problem. It states that the symmetric version of the problem always has an optimum solution which has a tree-like structure. In recent work, Hurkens,…

Optimization and Control · Mathematics 2008-11-24 Samuel Fiorini , Gianpaolo Oriolo , Laura Sanità , Dirk Oliver Theis

This work describes how the formalization of complex network concepts in terms of discrete mathematics, especially mathematical morphology, allows a series of generalizations and important results ranging from new measurements of the…

Statistical Mechanics · Physics 2007-09-19 Luciano da Fontoura Costa , Luis Enrique C. da Rocha

Networked structure emerged from a wide range of fields such as biological systems, World Wide Web and technological infrastructure. A deeply insight into the topological complexity of these networks has been gained. Some works start to pay…

Physics and Society · Physics 2012-02-03 Jiang Xiongfei

Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…

Populations and Evolution · Quantitative Biology 2022-07-06 Mareike Fischer , Tom Niklas Hamann , Kristina Wicke

This paper considers the problem of inferring the structure of a network from indirect observations. Each observation (a "trace") is the unordered set of nodes which are activated along a path through the network. Since a trace does not…

Data Structures and Algorithms · Computer Science 2013-01-30 Vincent Gripon , Michael Rabbat

The concept of multilayer networks has become recently integrated into complex systems modeling since it encapsulates a very general concept of complex relationships. Biological pathways are an example of complex real-world networks, where…

Human-Computer Interaction · Computer Science 2021-10-12 Hsiang-Yun Wu , Martin Nöllenburg , Ivan Viola

Network theory has unveiled the underlying structure of complex systems such as the Internet or the biological networks in the cell. It has identified universal properties of complex networks, and the interplay between their structure and…

Physics and Society · Physics 2015-09-21 Ginestra Bianconi

The treewidth of a graph is an important invariant in structural and algorithmic graph theory. This paper studies the treewidth of line graphs. We show that determining the treewidth of the line graph of a graph $G$ is equivalent to…

Combinatorics · Mathematics 2014-09-25 Daniel J. Harvey , David R. Wood

Complex network theory aims to model and analyze complex systems that consist of multiple and interdependent components. Among all studies on complex networks, topological structure analysis is of the most fundamental importance, as it…

Social and Information Networks · Computer Science 2010-09-15 Bo Yang , Jiming Liu

There are several good reasons you might want to read about uniform spanning trees, one being that spanning trees are useful combinatorial objects. Not only are they fundamental in algebraic graph theory and combinatorial geometry, but they…

Probability · Mathematics 2007-05-23 Robin Pemantle

The investigation of social networks is often hindered by their size as such networks often consist of at least thousands of vertices and edges. Hence, it is of major interest to derive compact structures that represent important…

Social and Information Networks · Computer Science 2023-09-28 Maximilian Stubbemann , Gerd Stumme

The topology of many real complex networks has been conjectured to be embedded in hidden metric spaces, where distances between nodes encode their likelihood of being connected. Besides of providing a natural geometrical interpretation of…

Physics and Society · Physics 2017-01-23 Antoine Allard , M. Ángeles Serrano , Guillermo García-Pérez , Marián Boguñá

Graph tries are a new and interesting data structure proposed by Jacquet in 2014. They generalize the classical trie data structure which has found many applications in computer science and is one of the most popular data structure on…

Probability · Mathematics 2021-05-07 Michael Fuchs , Tsan-Cheng Yu