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A wide range of data that appear in scientific experiments and simulations are multivariate or multifield in nature, consisting of multiple scalar fields. Topological feature search of such data aims to reveal important properties useful to…

Computational Geometry · Computer Science 2024-06-06 Tripti Agarwal , Amit Chattopadhyay , Vijay Natarajan

Neuronal network models and corresponding computer simulations are invaluable tools to aid the interpretation of the relationship between neuron properties, connectivity and measured activity in cortical tissue. Spatiotemporal patterns of…

Neurons and Cognition · Quantitative Biology 2022-09-16 Johanna Senk , Corto Carde , Espen Hagen , Torsten W. Kuhlen , Markus Diesmann , Benjamin Weyers

Advances in data collection in radiation therapy have led to an abundance of opportunities for applying data mining and machine learning techniques to promote new data-driven insights. In light of these advances, supporting collaboration…

Human-Computer Interaction · Computer Science 2020-10-22 Andrew Wentzel , Guadalupe Canahuate , Lisanne van Dijk , Abdallah Mohamed , Clifton David Fuller , G. Elisabeta Marai

Urban planning and morphology have relied on analytical cartography and visual communication tools for centuries to illustrate spatial patterns, propose designs, compare alternatives, and engage the public. Classic urban form visualizations…

Physics and Society · Physics 2019-10-02 Geoff Boeing

Background: Understanding the relationship between the Omics and the phenotype is a central problem in precision medicine. The high dimensionality of metabolomics data challenges learning algorithms in terms of scalability and…

Single-cell analysis is an increasingly relevant approach in "omics'' studies. In the last decade, it has been applied to various fields, including cancer biology, neuroscience, and, especially, developmental biology. This rise in…

Genomics · Quantitative Biology 2024-08-23 Jafar Isbarov , Elmir Mahammadov

Establishing common ground and maintaining shared awareness amongst participants is a key challenge in collaborative visualization. For real-time collaboration, existing work has primarily focused on synchronizing constituent visualizations…

Human-Computer Interaction · Computer Science 2020-09-08 Rupayan Neogy , Jonathan Zong , Arvind Satyanarayan

In topological data analysis and visualization, topological descriptors such as persistence diagrams, merge trees, contour trees, Reeb graphs, and Morse-Smale complexes play an essential role in capturing the shape of scalar field data. We…

Human-Computer Interaction · Computer Science 2024-06-06 Lin Yan , Talha Bin Masood , Raghavendra Sridharamurthy , Farhan Rasheed , Vijay Natarajan , Ingrid Hotz , Bei Wang

Climate science produces a wealth of complex, high-dimensional, multivariate data from observations and numerical models. These data are critical for understanding climate changes and their socioeconomic impacts. Climate scientists are…

Human-Computer Interaction · Computer Science 2024-08-01 Abdullah-Al-Raihan Nayeem , Dongyun Han , Huikyo Lee , Donghoon Kim , Daniel Feldman , William J. Tolone , Daniel Crichton , Isaac Cho

Cell state discovery is crucial for understanding biological systems and enhancing medical outcomes. A key aspect of this process is identifying distinct biomarkers that define specific cell states. However, difficulties arise from the…

Human-Computer Interaction · Computer Science 2025-12-19 Rui Sheng , Zelin Zang , Jiachen Wang , Yan Luo , Zixin Chen , Yan Zhou , Shaolun Ruan , Huamin Qu

Functional MRI (fMRI) is widely used to examine brain functionality by detecting alteration in oxygenated blood flow that arises with brain activity. In this study, complexity specific image categorization across different visual datasets…

Image and Video Processing · Electrical Eng. & Systems 2023-09-08 Vamshi K. Kancharala , Debanjali Bhattacharya , Neelam Sinha

Graph vertex ordering is widely employed in spatial data analysis, especially in urban analytics, where street graphs serve as spatial discretization for modeling and simulation. It is also crucial for visualization, as many methods require…

Graphics · Computer Science 2025-10-23 Karelia Salinas , Victor Barella , Thales Viera , Luis Gustavo Nonato

More than ten thousand Chinese historical painters are recorded in the literature; their cohort analysis has always been a key area of research on Chinese painting history for both professional historians and amateur enthusiasts. However,…

Human-Computer Interaction · Computer Science 2025-11-07 Yingping Yang , Guangtao You , Jiayi Chen , Jiazhou Chen

Observing the relationship between two or more variables over space and time is essential in many domains. For instance, looking, for different countries, at the evolution of both the life expectancy at birth and the fertility rate will…

Human-Computer Interaction · Computer Science 2019-10-16 Vanessa Peña-Araya , Emmanuel Pietriga , Anastasia Bezerianos

An optical flow gradient algorithm was applied to spontaneously forming net- works of neurons and glia in culture imaged by fluorescence optical microscopy in order to map functional calcium signaling with single pixel resolution. Optical…

Computational Engineering, Finance, and Science · Computer Science 2010-01-22 Marius Buibas , Diana Yu , Krystal Nizar , Gabriel A. Silva

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

Algorithmic surgical workflow recognition is an ongoing research field and can be divided into laparoscopic (Internal) and operating room (External) analysis. So far many different works for the internal analysis have been proposed with the…

Computer Vision and Pattern Recognition · Computer Science 2022-11-24 Tobias Czempiel , Aidean Sharghi , Magdalini Paschali , Nassir Navab , Omid Mohareri

Widefield calcium imaging has recently emerged as a powerful experimental technique to record coordinated large-scale brain activity. These measurements present a unique opportunity to characterize spatiotemporal coherent structures that…

Neurons and Cognition · Quantitative Biology 2021-09-07 Nathaniel J Linden , Dennis R Tabuena , Nicholas A Steinmetz , William J Moody , Steven L Brunton , Bingni W Brunton

The visual systems of many mammals, including humans, is able to integrate the geometric information of visual stimuli and to perform cognitive tasks already at the first stages of the cortical processing. This is thought to be the result…

Computer Vision and Pattern Recognition · Computer Science 2014-10-06 Giacomo Cocci , Davide Barbieri , Giovanna Citti , Alessandro Sarti

The rapid development of Convolutional Neural Networks (CNNs) in recent years has triggered significant breakthroughs in many machine learning (ML) applications. The ability to understand and compare various CNN models available is thus…

Machine Learning · Computer Science 2022-01-19 Xiwei Xuan , Xiaoyu Zhang , Oh-Hyun Kwon , Kwan-Liu Ma