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Coronavirus outbreak is one of the most challenging pandemics for the entire human population of the planet Earth. Techniques such as the isolation of infected persons and maintaining social distancing are the only preventive measures…

Social and Information Networks · Computer Science 2020-09-01 Rahul Mishra , Hari Prabhat Gupta , Tanima Dutta

In a recent work we introduced a novel method to compute the effective reproduction number $R_t$ and we applied it to describe the development of the COVID-19 outbreak in Italy. The study is based on the number of daily positive swabs as…

We present an empirical algorithm to forecast the evolution of the number of COVID-19 symptomatic patients in the early stages of the pandemic spread and after strict social distancing interventions. The algorithm is based on a low…

Populations and Evolution · Quantitative Biology 2020-11-20 Luis Alvarez

We introduce an extended SEIR infectious disease model with data assimilation for the study of the spread of COVID-19. In this framework, undetected asymptomatic and pre-symptomatic cases are taken into account, and the impact of their…

Numerical Analysis · Mathematics 2021-11-01 Qiwen Sun , Serge Richard , Takemasa Miyoshi

We propose a robust parameter estimation method for dynamical systems based on Statistical Learning techniques which aims to estimate a set of parameters that well fit the dynamics in order to obtain robust evidences about the qualitative…

Methodology · Statistics 2021-02-26 Diego Marcondes

With the unfolding of the COVID-19 pandemic, mathematical modeling of epidemics has been perceived and used as a central element in understanding, predicting, and governing the pandemic event. However, soon it became clear that long term…

Populations and Evolution · Quantitative Biology 2020-07-09 Ziqi Wang , Marco Broccardo , Arnaud Mignan , Didier Sornette

Clinical measurements, such as body temperature, are often collected over time to monitor an individual's underlying health condition. These measurements exhibit complex temporal dynamics, necessitating sophisticated statistical models to…

Methodology · Statistics 2024-12-17 Xiaoran Ma , Wensheng Guo , Peter Kotanko , Yuedong Wang

This is a pedagogical paper on estimating the number of people that can be infected by one infectious person during an epidemic outbreak, known as the reproduction number. Knowing the number is crucial for developing policy responses. There…

Populations and Evolution · Quantitative Biology 2020-06-30 H. Susanto , V. R. Tjahjono , A. Hasan , M. F. Kasim , N. Nuraini , E. R. M. Putri , R. Kusdiantara , H. Kurniawan

We propose two stochastic models for the Coronavirus pandemic. The statistical properties of the models, in particular the correlation functions and the probability density function, have duly been computed. Our models, which generalises a…

Medical Physics · Physics 2020-12-04 Giorgio Sonnino , Fernando Mora , Pasquale Nardone

In this article, we consider a dynamic epidemiology model for the spread of the COVID-19 infection. Starting from the classical SEIR model, the model is modified so as to better describe characteristic features of the underlying pathogen…

Populations and Evolution · Quantitative Biology 2020-05-22 Daniela Calvetti , Alexander Hoover , Johnie Rose , Erkki Somersalo

New coronavirus disease (COVID-19) has constituted a global pandemic and has spread to most countries and regions in the world. By understanding the development trend of a regional epidemic, the epidemic can be controlled using the…

Physics and Society · Physics 2020-05-15 Bingjie Yan , Xiangyan Tang , Boyi Liu , Jun Wang , Yize Zhou , Guopeng Zheng , Qi Zou , Yao Lu , Wenxuan Tu

Epidemiological models with constant parameters may not capture satisfactory infection patterns in the presence of pharmaceutical and non-pharmaceutical mitigation measures during a pandemic, since infectiousness is a function of time. In…

Populations and Evolution · Quantitative Biology 2022-05-16 K. D. Olumoyin , A. Q. M. Khaliq , K. M. Furati

Count-valued time series data are routinely collected in many application areas. We are particularly motivated to study the count time series of daily new cases, arising from COVID-19 spread. We propose two Bayesian models, a time-varying…

Methodology · Statistics 2021-03-10 Arkaprava Roy , Sayar Karmakar

Faced with the 2020 SARS-CoV2 epidemic, public health officials have been seeking models that could be used to predict not only the number of new cases but also the levels of hospitalisation, critical care and deaths. In this paper we…

Populations and Evolution · Quantitative Biology 2020-12-24 Jonathan Wells , Chris Robertson , Vincent Marmara , Alan Yeung , Adam Kleczkowski

This paper aims to provide reliable estimates for the COVID-19 contact rate of a Susceptible-Infected-Recovered (SIR) model. From observable data on confirmed, recovered, and deceased cases, a noisy measurement for the contact rate can be…

Econometrics · Economics 2021-02-22 Tobias Hartl

In this work, we discuss the SIR epidemiological model and different variations of it applied to the propagation of the COVID-19 pandemia; we employ the data of the state of Guanajuato and of Mexico. We present some considerations that can…

Populations and Evolution · Quantitative Biology 2022-11-16 Nana Cabo Bizet , Jonanthan Hidalgo Núñez , Gil Estefano Rodrígez Rivera

We propose, implement, and evaluate a method to estimate the daily number of new symptomatic COVID-19 infections, at the level of individual U.S. counties, by deconvolving daily reported COVID-19 case counts using an estimated…

Applications · Statistics 2022-03-01 Maria Jahja , Andrew Chin , Ryan J. Tibshirani

In this paper we create a compartmental, stochastic process model of SARS-CoV-2 transmission, where the process's mean and variance have distinct dynamics. The model is fit to time series data from Washington from January 2020 to March 2021…

Populations and Evolution · Quantitative Biology 2022-05-05 Niket Thakkar , Mike Famulare

We propose an epidemiological model using an adaptive dynamic three compartment (with four states) SIR(D) model. Our approach is similar to non-parametric curve fitting in spirit and automatically adapts to key external factors, such as…

Applications · Statistics 2020-09-14 Madhuchhanda Bhattacharjee , Arup Bose

This work provides an overview on deterministic and stochastic models that have previously been proposed by us to study the transmission dynamics of the Coronavirus Disease 2019 (COVID-19) in Europe and USA. Briefly, we describe realistic…

Populations and Evolution · Quantitative Biology 2022-07-11 Giorgio Sonnino , Philippe Peeters , Pasquale Nardone
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