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A system-level genetic code is a hypothetical genetic code that exclusively or preferentially codes systems of interacting coadapted parts. System-level genetic codes differ from part-level genetic codes in which each discrete part is coded…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 John F. McGowan

The dose delivered to the planning target volume by proton beams is highly conformal, sparing organs at risk and normal tissues. New treatment planning systems adapted to spot scanning techniques have been recently proposed to…

Medical Physics · Physics 2022-05-18 François Smekens , Nicolas Freud , Bruno Sixou , Guillaume Beslon , Jean M Létang

The parallel code NMAGIC is an implementation of a particle-based method to create made-to-measure models in agreement with observations of galaxies. It works by slowly correcting the particle weights of an evolving N-body system, until a…

Cosmology and Nongalactic Astrophysics · Physics 2012-07-30 Lucia Morganti , Ortwin Gerhard

We present GRACE, a simulation-native agent for autonomous experimental design in high-energy and nuclear physics. Given multimodal input in the form of a natural-language prompt or a published experimental paper, the agent extracts a…

High Energy Physics - Experiment · Physics 2026-02-18 Justin Hill , Hong Joo Ryoo

Generative learned image compression methods using Vector Quantization (VQ) have recently shown impressive potential in balancing distortion and perceptual quality. However, these methods typically estimate the entropy of VQ indices using a…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Niu Yi , Xu Tianyi , Ma Mingming , Wang Xinkun

Quantum-mechanical initial conditions for the fluctuations of the geometry can be assigned in excess of a given physical wavelength. The two-point functions of the scalar and tensor modes of the geometry will then inherit corrections…

High Energy Physics - Theory · Physics 2009-11-10 Massimo Giovannini

In this work, we address the task of natural image generation guided by a conditioning input. We introduce a new architecture called conditional invertible neural network (cINN). The cINN combines the purely generative INN model with an…

Computer Vision and Pattern Recognition · Computer Science 2019-07-11 Lynton Ardizzone , Carsten Lüth , Jakob Kruse , Carsten Rother , Ullrich Köthe

The growth of structure from scale-free initial conditions is one of the most important tests of cosmological simulation methods, providing a realistically complex problem in which numerical results can be compared to rigorous analytic…

Astrophysics · Physics 2007-05-23 J. Michael Owen , David H. Weinberg , Jens V. Villumsen

Spatial environmental variation can either amplify or suppress the fixation of beneficial mutants in structured populations, yet the interplay of ecological factors and spatial structure in determining which outcome occurs remains…

Populations and Evolution · Quantitative Biology 2026-05-07 Hossein Nemati , Kamran Kaveh , Jakub Svoboda , Mohammad Reza Ejtehadi , Krishnendu Chatterjee

Genome data are crucial in modern medicine, offering significant potential for diagnosis and treatment. Thanks to technological advancements, many millions of healthy and diseased genomes have already been sequenced; however, obtaining the…

Genomics · Quantitative Biology 2024-06-18 Teddy Lazebnik , Liron Simon-Keren

This is the first in a series of papers devoted to fully general-relativistic $N$-body simulations applied to late-time cosmology. The purpose of this paper is to present the combination of a numerical relativity scheme, discretization…

Cosmology and Nongalactic Astrophysics · Physics 2019-10-29 David Daverio , Yves Dirian , Ermis Mitsou

We develop a new method for portrait image editing, which supports fine-grained editing of geometries, colors, lights and shadows using a single neural network model. We adopt a novel asymmetric conditional GAN architecture: the generators…

Computer Vision and Pattern Recognition · Computer Science 2022-04-05 Linlin Liu , Qian Fu , Fei Hou , Ying He

Newtonian N-body simulations have been employed successfully over the past decades for the simulation of the cosmological large-scale structure. Such simulations usually ignore radiation perturbations (photons and massless neutrinos) and…

Cosmology and Nongalactic Astrophysics · Physics 2017-07-07 Julian Adamek , Jacob Brandbyge , Christian Fidler , Steen Hannestad , Cornelius Rampf , Thomas Tram

Stochastic simulation can make the molecular processes of cellular control more vivid than the traditional differential-equation approach by generating typical system histories instead of just statistical measures such as the mean and…

Subcellular Processes · Quantitative Biology 2018-09-18 Kevin Y. Chen , Daniel M. Zuckerman , Philip C. Nelson

We present a method for generating suites of dark-matter halo catalogs with only a few $N$-body simulations, focusing on making small changes to the underlying cosmology of a simulation with high precision. In the context of blind…

Cosmology and Nongalactic Astrophysics · Physics 2019-03-26 Lehman H. Garrison , Daniel J. Eisenstein

Genetic algorithms are heuristic optimization techniques inspired by Darwinian evolution. Quantum computation is a new computational paradigm which exploits quantum resources to speed up information processing tasks. Therefore, it is…

Quantum Physics · Physics 2023-02-20 Rubén Ibarrondo , Giancarlo Gatti , Mikel Sanz

The standard genetic code is well known to be optimized for minimizing the phenotypic effects of single nucleotide substitutions, a property that was likely selected for during the emergence of a universal code. Given the fitness advantage…

Populations and Evolution · Quantitative Biology 2017-11-28 Shubham Tripathi , Michael W. Deem

We present development of a genetic algorithm for fitting potential energy curves of diatomic molecules to experimental data. Our approach does not involve any functional form for fitting, which makes it a general fitting procedure. In…

Chemical Physics · Physics 2017-09-20 Ian Stevenson , Jesús Pérez-Ríos

We present a major new version of Scenic, a probabilistic programming language for writing formal models of the environments of cyber-physical systems. Scenic has been successfully used for the design and analysis of CPS in a variety of…

A novel simulation strategy is proposed to search for semiconductor quantum devices which are optimized with respect to required performances. Based on evolutionary programming, a tecnique implementing the paradigm of genetic algorithms to…

Materials Science · Physics 2009-10-31 Guido Goldoni , Fausto Rossi
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