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Related papers: Group testing with nested pools

200 papers

Pooling specimens, a well-accepted sampling strategy in biomedical research, can be applied to reduce the cost of studying biomarkers. Even if the cost of a single assay is not a major restriction in evaluating biomarkers, pooling can be a…

Applications · Statistics 2012-03-01 Enrique F. Schisterman , Albert Vexler , Aijun Ye , Neil J. Perkins

We consider a new group testing model wherein each item is a binary random variable defined by an a priori probability of being defective. We assume that each probability is small and that items are independent, but not necessarily…

Information Theory · Computer Science 2018-07-24 Tongxin Li , Chun Lam Chan , Wenhao Huang , Tarik Kaced , Sidharth Jaggi

In this paper, we propose a computer-oriented method of construction of optimal group sequential hypothesis tests with variable group sizes. In particular, for independent and identically distributed observations we obtain the form of…

Methodology · Statistics 2023-03-30 Andrey Novikov

Group testing can help maintain a widespread testing program using fewer resources amid a pandemic. In a group testing setup, we are given n samples, one per individual. Each individual is either infected or uninfected. These samples are…

Signal Processing · Electrical Eng. & Systems 2023-07-19 Shu-Jie Cao , Ritesh Goenka , Chau-Wai Wong , Ajit Rajwade , Dror Baron

In this paper, an information theoretic analysis on non-adaptive group testing schemes based on sparse pooling graphs is presented. The binary status of the objects to be tested are modeled by i.i.d. Bernoulli random variables with…

Information Theory · Computer Science 2013-04-29 Tadashi Wadayama

In nested simulation literature, a common assumption is that the experimenter can choose the number of outer scenarios to sample. This paper considers the case when the experimenter is given a fixed set of outer scenarios from an external…

Methodology · Statistics 2024-05-14 Mingbin Ben Feng , Eunhye Song

The paper is focused on the problem of estimating the probability $p$ of individual contaminated sample, under group testing. The precision of the estimator is given by the probability of proportional closeness, a concept defined in the…

Statistics Theory · Mathematics 2017-12-27 Yaakov Malinovsky , Shelemyahu Zacks

We give a general unified method that can be used for $L_1$ {\em closeness testing} of a wide range of univariate structured distribution families. More specifically, we design a sample optimal and computationally efficient algorithm for…

Data Structures and Algorithms · Computer Science 2015-08-25 Ilias Diakonikolas , Daniel M. Kane , Vladimir Nikishkin

The cataclysmic contagion based calamity -- Covid-19 has shown us a clear need for a comprehensive community based strategy that overcomes the sheer complexity of controlling it and the caveats of current methods. In this regard, as seen in…

Physics and Society · Physics 2021-09-17 Surya Dheeshjith , Inavamsi Enaganti , Bud Mishra

In this note, we present a new adaptive algorithm for generalized group testing, which is asymptotically optimal if $d=o(\log_2|E|)$, $E$ is a set of potentially contaminated sets, $d$ is a maximal size of elements of $E$. Also, we design a…

Information Theory · Computer Science 2022-11-09 Ilya Vorobyev

The group testing problem is concerned with identifying a small set of infected individuals in a large population. At our disposal is a testing procedure that allows us to test several individuals together. In an idealized setting, a test…

Information Theory · Computer Science 2023-09-19 Oliver Gebhard , Oliver Johnson , Philipp Loick , Maurice Rolvien

We consider nonadaptive group testing with Bernoulli tests, where each item is placed in each test independently with some fixed probability. We give a tight threshold on the maximum number of tests required to find the defective set under…

Information Theory · Computer Science 2017-11-16 Matthew Aldridge

Assuming that data are collected sequentially from independent streams, we consider the simultaneous testing of multiple binary hypotheses under two general setups; when the number of signals (correct alternatives) is known in advance, and…

Statistics Theory · Mathematics 2017-02-14 Yanglei Song , Georgios Fellouris

Non-adaptive group testing refers to the problem of inferring a sparse set of defectives from a larger population using the minimum number of simultaneous pooled tests. Recent positive results for noiseless group testing have motivated the…

Information Theory · Computer Science 2021-07-16 Gabriel Arpino , Nicolò Grometto , Afonso S. Bandeira

We consider the problem of group testing (pooled testing), first introduced by Dorfman. For non-adaptive testing strategies, we refer to a non-defective item as `intruding' if it only appears in positive tests. Such items cause…

Probability · Mathematics 2023-09-19 Letian Yu , Fraser Daly , Oliver Johnson

In multistage group testing, the tests within the same stage are considered nonadaptive, while those conducted across different stages are adaptive. Specifically, when the pools within the same stage are disjoint, meaning that the entire…

Information Theory · Computer Science 2025-07-10 Guojiang Shao

Consider the multiple testing problem of testing k null hypotheses, where the unknown family of distributions is assumed to satisfy a certain monotonicity assumption. Attention is restricted to procedures that control the familywise error…

Statistics Theory · Mathematics 2007-06-13 E. L. Lehmann , Joseph P. Romano , Juliet Popper Shaffer

We consider the quantitative group testing problem where the objective is to identify defective items in a given population based on results of tests performed on subsets of the population. Under the quantitative group testing model, the…

Information Theory · Computer Science 2017-10-24 Chao Wang , Qing Zhao , Chen-Nee Chuah

Group testing can help maintain a widespread testing program using fewer resources amid a pandemic. In group testing, we are given $n$ samples, one per individual. These samples are arranged into $m < n$ pooled samples, where each pool is…

Information Theory · Computer Science 2022-01-20 Ritesh Goenka , Shu-Jie Cao , Chau-Wai Wong , Ajit Rajwade , Dror Baron

Major advances in public health have resulted from disease prevention. However, prevention of a new infectious disease by vaccination or pharmaceuticals is made difficult by the slow process of vaccine and drug development. We propose an…

Populations and Evolution · Quantitative Biology 2021-04-15 Jussi Taipale , Ioannis Kontoyiannis , Sten Linnarsson