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Steady states are frequently used to investigate the long-term behaviors of (bio)-chemical systems. Recently, there has been a growing interest in network-based approaches due to their efficiency in deriving parametrizations of positive…

Dynamical Systems · Mathematics 2024-04-02 Bryan S. Hernandez , Patrick Vincent N. Lubenia

The large-scale integration of Distributed Energy Resources (DERs) into the electric power system offers new opportunities to ensure stability. For example, Active Distribution Networks (ADNs) can be used in (sub-)transmission systems in…

Systems and Control · Electrical Eng. & Systems 2022-07-13 Jannik Zwartscholten , Christian Rehtanz

Respondent-driven sampling (RDS) is a method of chain referral sampling popular for sampling hidden and/or marginalized populations. As such, even under the ideal sampling assumptions, the performance of RDS is restricted by the underlying…

Methodology · Statistics 2017-11-02 Mohammad Khabbazian , Bret Hanlon , Zoe Russek , Karl Rohe

With the advent of the 5G wireless networks, achieving tens of gigabits per second throughputs and low, milliseconds, latency has become a reality. This level of performance will fuel numerous real-time applications, such as autonomy and…

Signal Processing · Electrical Eng. & Systems 2020-09-14 Ashkan Samiee , Yiming Zhou , Tingyi Zhou , Bahram Jalali

The design of hydrogels that combine mechanical robustness with dynamic reconfigurability remains a fundamental challenge, as increasing crosslink dissociation rates compromise network integrity. This limitation is addressed through the…

Soft Condensed Matter · Physics 2025-08-28 Pierre Le Bourdonnec , Charafeddine Ferkous , Leo Communal , Luca Cipelletti , Rémi Merindol

Recent advances in unsupervised anomaly detection (UAD) have shifted from single-class to multi-class scenarios. In such complex contexts, the increasing pattern diversity has brought two challenges to reconstruction-based approaches: (1)…

Computer Vision and Pattern Recognition · Computer Science 2025-04-22 Jingyu Xing , Chenwei Tang , Tao Wang , Rong Xiao , Wei Ju , Ji-Zhe Zhou , Liangli Zhen , Jiancheng Lv

Antibody-drug conjugates (ADCs) have emerged as a promising class of targeted cancer therapeutics, but the design and optimization of their cytotoxic payloads remain challenging. This study introduces DumplingGNN, a novel hybrid Graph…

Biomolecules · Quantitative Biology 2024-10-10 Shengjie Xu , Lingxi Xie

Surfaces serve as highly efficient catalysts for a vast variety of chemical reactions. Typically, such surface reactions involve billions of molecules which diffuse and react over macroscopic areas. Therefore, stochastic fluctuations are…

Statistical Mechanics · Physics 2007-10-12 B. Barzel , O. Biham

Single-atom catalysts (SACs) have emerged as frontiers for catalyzing chemical reactions, yet the diverse combinations of active elements and support materials, the nature of coordination environments, elude traditional methodologies in…

Materials Science · Physics 2024-02-07 Haoyu Yang , Juanli Zhao , Qiankun Wang , Bin Liu , Wei Luo , Ziqi Sun , Ting Liao

Concentrated solutions of short blunt-ended DNA duplexes, down to 6 base pairs, are known to order into the nematic liquid crystal phase. This self-assembly is due to the stacking interactions between the duplex terminals that promotes…

Soft Condensed Matter · Physics 2015-05-30 Cristiano De Michele , Tommaso Bellini , Francesco Sciortino

Multistep catalytic reactions use two different catalysts for the $A\to B$ and the subsequent $B\to C$ reaction, respectively. Often the employed catalysts are chemically incompatible, such as acid-base systems, which prohibits simple…

Computational Physics · Physics 2021-09-10 Gabriel Sitaru , Stephan Gekle

Accurately modeling chemical reactions at the atomistic level requires high-level electronic structure theory due to the presence of unpaired electrons and the need to properly describe bond breaking and making energetics. Commonly used…

As superconductor quantum technologies are moving towards large-scale integrated circuits, a robust and flexible approach to routing photons at the quantum level becomes a critical problem. Active circuits, which contain parametrically…

Quantum Physics · Physics 2018-04-25 A. Metelmann , H. E. Türeci

Antibody-drug conjugate (ADC) has revolutionized the field of cancer treatment in the era of precision medicine due to their ability to precisely target cancer cells and release highly effective drug. Nevertheless, the realization of…

Machine Learning · Computer Science 2024-01-18 Liye Chen , Biaoshun Li , Yihao Chen , Mujie Lin , Shipeng Zhang , Chenxin Li , Yu Pang , Ling Wang

Several living systems have been examined for their apparent optimization of structure and function for quantum behavior at biological length scales. Orthodox type II endonucleases, the largest class of restriction enzymes, recognize…

Biological Physics · Physics 2014-03-24 P. Kurian , G. Dunston , J. Lindesay

DNA strand displacement is a key reaction in DNA homologous recombination and DNA mismatch repair and is also heavily utilized in DNA-based computation and locomotion. Despite its ubiquity in science and engineering, sequence-dependent…

Biological Physics · Physics 2016-04-13 Bo Broadwater , Harold Kim

The feasibility of deep neural networks (DNNs) to address data stream problems still requires intensive study because of the static and offline nature of conventional deep learning approaches. A deep continual learning algorithm, namely…

Machine Learning · Computer Science 2020-01-10 Andri Ashfahani , Mahardhika Pratama

While the thermodynamics of DNA hybridization is well understood, much less is known about the kinetics of this classic system. Filling this gap in our understanding has new urgency because DNA nanotechnology often depends critically on…

Soft Condensed Matter · Physics 2013-10-28 Thomas E. Ouldridge , Petr Šulc , Flavio Romano , Jonathan P. K. Doye , Ard A. Louis

Electric circuits manipulate electric charge and magnetic flux via a small set of discrete components to implement useful functionality over continuous time-varying signals represented by currents and voltages. Much of the same…

Systems and Control · Computer Science 2018-12-11 Luca Cardelli , Mirco Tribastone , Max Tschaikowski

We study numerically the mechanical stability and elasticity properties of duplex DNA molecules within the frame of a network model incorporating microscopic degrees of freedom related with the arrangement of the base pairs. We pay special…

Pattern Formation and Solitons · Physics 2015-06-26 D. Hennig , J. F. R. Archilla