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In this Ansatz we consider theoretical constructions of RNA polymers into automata, a form of computational structure. The basis for transitions in our automata are plausible RNA enzymes that may perform ligation or cleavage. Limited to…

Quantitative Methods · Quantitative Biology 2022-05-24 Adam J. Svahn , Mikhail Prokopenko

Deterministic two-way transducers define the robust class of regular functions which is, among other good properties, closed under composition. However, the best known algorithms for composing two-way transducers cause a double exponential…

Formal Languages and Automata Theory · Computer Science 2017-02-24 Luc Dartois , Paulin Fournier , Ismaël Jecker , Nathan Lhote

A family of reversible deterministic cellular automata, including the rules 54 and 201 of [Bobenko et al., Commun. Math. Phys. 158, 127 (1993)] as well as their kinetically constrained quantum (unitary) or stochastic deformations, is shown…

Statistical Mechanics · Physics 2021-06-04 Tomaz Prosen

This paper introduces and investigates decision problems for numberless probabilistic automata, i.e. probabilistic automata where the support of each probabilistic transitions is specified, but the exact values of the probabilities are not.…

Formal Languages and Automata Theory · Computer Science 2017-09-12 Nathanaël Fijalkow , Hugo Gimbert , Florian Horn , Youssouf Oualhadj

Reversible weighted automata are introduced and considered in a specific setting where the weights are taken from a nontrivial locally finite commutative ring such as a finite field. It is shown that the supports of series realised by such…

Formal Languages and Automata Theory · Computer Science 2026-01-15 Peter Kostolányi , Andrej Ravinger

We advance the characterization of complexity in quantum many-body systems by examining $W$-states embedded in a spin chain. Such states show an amount of non-stabilizerness or "magic" (measured as the Stabilizer R\'enyi Entropy -SRE-) that…

Quantum Physics · Physics 2026-01-30 J. Odavić , T. Haug , G. Torre , A. Hamma , F. Franchini , S. M. Giampaolo

While weighted automata provide a natural framework to express quantitative properties, many basic properties like average response time cannot be expressed with weighted automata. Nested weighted automata extend weighted automata and…

Formal Languages and Automata Theory · Computer Science 2016-06-14 Krishnendu Chatterjee , Thomas A. Henzinger , Jan Otop

Quantum algorithms and complexity have recently been studied not only for discrete, but also for some numerical problems. Most attention has been paid so far to the integration problem, for which a speed-up is shown by quantum computers…

Quantum Physics · Physics 2007-05-23 Boleslaw Kacewicz

Power dissipation is known as the most notable limiting factor in all nano-electronic design techniques including Quantum-dot Cellular Automata (QCA). The familiar reversible computing approach is used as a reasonably reliable solution,…

Emerging Technologies · Computer Science 2019-12-11 Moein Sarvaghad-Moghaddam , Ali A. Orouji , Zeinab Ramezani , Iraj Sadegh Amiri , Alireza Mahdavi Nejad

Spontaneous self-replication in cellular automata has long been considered rare, with most known examples requiring careful design or artificial initialization. In this paper, we present formal, causal evidence that such replication can…

Cellular Automata and Lattice Gases · Physics 2025-08-12 Arend Hintze , Clifford Bohm

We introduce homing vector automata, which are finite automata augmented by a vector that is multiplied at each step by a matrix determined by the current transition, and have to return the vector to its original setting in order to accept…

Formal Languages and Automata Theory · Computer Science 2017-08-01 Özlem Salehi , A. C. Cem Say , Flavio D'Alessandro

Probabilistic timed automata (PTAs) are timed automata (TAs) extended with discrete probability distributions.They serve as a mathematical model for a wide range of applications that involve both stochastic and timed behaviours. In this…

Formal Languages and Automata Theory · Computer Science 2018-06-14 Hongfei Fu , Yi Li , Jianlin Li , Lijun Zhang

Microbiological systems evolve to fulfill their tasks with maximal efficiency. The immune system is a remarkable example, where self-non self distinction is accomplished by means of molecular interaction between self proteins and antigens,…

Cell Behavior · Quantitative Biology 2013-08-26 Marcio Argollo de Menezes , Edgardo Brigatti , Veit Schwämmle

We explore language semantics for automata combining probabilistic and nondeterministic behavior. We first show that there are precisely two natural semantics for probabilistic automata with nondeterminism. For both choices, we show that…

Formal Languages and Automata Theory · Computer Science 2018-05-30 Gerco van Heerdt , Justin Hsu , Joël Ouaknine , Alexandra Silva

We present a few results and several open problems concerning complete deterministic finite automata in which every non-empty subset of the state set occurs as the image of the whole state set under the action of a suitable input word.

Formal Languages and Automata Theory · Computer Science 2016-07-05 Evgenija Bondar , Mikhail Volkov

Algorithms which learn environments represented by automata in the past have had complexity scaling with the number of states in the automaton, which can be exponentially large even for automata recognizing regular expressions with a small…

Formal Languages and Automata Theory · Computer Science 2024-05-13 Ali Cataltepe , Vanessa Kosoy

The new finite state machine package in the mathematics software system SageMath is presented and illustrated by many examples. Several combinatorial problems, in particular digit problems, are introduced, modeled by automata and…

Formal Languages and Automata Theory · Computer Science 2023-06-22 Clemens Heuberger , Daniel Krenn , Sara Kropf

We realize constant-space quantum computation by measure-many two-way quantum finite automata and evaluate their language recognition power by analyzing patterns of their exotic behaviors and by exploring their structural properties. In…

Formal Languages and Automata Theory · Computer Science 2016-06-29 Tomoyuki Yamakami

In this paper we propose the recursive stochastic state selection method, an extension of the recently developed stochastic state selection method in Monte Carlo calculations for quantum spin systems. In this recursive method we use…

Statistical Mechanics · Physics 2009-11-10 Tomo Munehisa , Yasuko Munehisa

We consider infinite-state Attacker-Defender games with reachability objectives. The results of the paper are twofold. Firstly we prove a new language-theoretic result for weighted automata on infinite words and show its encoding into the…

Formal Languages and Automata Theory · Computer Science 2015-04-28 Vesa Halava , Tero Harju , Reino Niskanen , Igor Potapov
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