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For most diseases, building large databases of labeled genetic data is an expensive and time-demanding task. To address this, we introduce genetic Generative Adversarial Networks (gGAN), a semi-supervised approach based on an innovative GAN…

Machine Learning · Computer Science 2020-07-03 Caio Davi , Ulisses Braga-Neto

Generating multiple-choice questions (MCQs) with difficulty estimation remains challenging in automated MCQ-generation systems used in adaptive, AI-assisted education. This study proposes a novel methodology for generating MCQs with…

Computation and Language · Computer Science 2026-04-14 Mehmet Can Şakiroğlu , H. Altay Güvenir , Kamer Kaya

Researchers and scientists increasingly find themselves in the position of having to quickly understand large amounts of technical material. Our goal is to effectively serve this need by using bibliometric text mining and summarization…

Information Retrieval · Computer Science 2014-02-05 Vahed Qazvinian , Dragomir R. Radev , Saif M. Mohammad , Bonnie Dorr , David Zajic , Michael Whidby , Taesun Moon

Semantic segmentation has been widely investigated in the community, in which the state of the art techniques are based on supervised models. Those models have reported unprecedented performance at the cost of requiring a large set of high…

Computer Vision and Pattern Recognition · Computer Science 2022-01-11 Rihuan Ke , Angelica Aviles-Rivero , Saurabh Pandey , Saikumar Reddy , Carola-Bibiane Schönlieb

Word embeddings have been shown adept at capturing the semantic and syntactic regularities of the natural language text, as a result of which these representations have found their utility in a wide variety of downstream content analysis…

Computation and Language · Computer Science 2021-03-02 Kishlay Jha

A key component of deep learning (DL) for natural language processing (NLP) is word embeddings. Word embeddings that effectively capture the meaning and context of the word that they represent can significantly improve the performance of…

The ability to accurately estimate risk of developing breast cancer would be invaluable for clinical decision-making. One promising new approach is to integrate image-based risk models based on deep neural networks. However, one must take…

Image and Video Processing · Electrical Eng. & Systems 2020-09-17 Yue Liu , Hossein Azizpour , Fredrik Strand , Kevin Smith

Relation extraction is an important but challenging task that aims to extract all hidden relational facts from the text. With the development of deep language models, relation extraction methods have achieved good performance on various…

Computation and Language · Computer Science 2022-08-17 Sheng Zhang , Patrick Ng , Zhiguo Wang , Bing Xiang

Adoption of recently developed methods from machine learning has given rise to creation of drug-discovery knowledge graphs (KG) that utilize the interconnected nature of the domain. Graph-based modelling of the data, combined with KG…

Machine Learning · Computer Science 2022-07-27 Stephen Bonner , Ufuk Kirik , Ola Engkvist , Jian Tang , Ian P Barrett

Metastatic prostate cancer is one of the most common cancers in men. In the advanced stages of prostate cancer, tumours can metastasise to other tissues in the body, which is fatal. In this thesis, we performed a genetic analysis of…

Information Retrieval · Computer Science 2023-03-30 Yuxuan Li , Shi Zhou

Increasing demands in software industry and scarcity of software engineers motivates researchers and practitioners to automate the process of software generation and configuration. Large scale automatic software generation and configuration…

Software Engineering · Computer Science 2023-05-31 Shantanu Mandal

Previous works on knowledge-to-text generation take as input a few RDF triples or key-value pairs conveying the knowledge of some entities to generate a natural language description. Existing datasets, such as WIKIBIO, WebNLG, and E2E,…

Computation and Language · Computer Science 2020-10-27 Liying Cheng , Dekun Wu , Lidong Bing , Yan Zhang , Zhanming Jie , Wei Lu , Luo Si

With an ever-increasing number of scientific papers published each year, it becomes more difficult for researchers to explore a field that they are not closely familiar with already. This greatly inhibits the potential for…

Machine Learning · Computer Science 2021-06-08 Anna Nikiforovskaya , Nikolai Kapralov , Anna Vlasova , Oleg Shpynov , Aleksei Shpilman

Content generation modeling has emerged as a promising direction in computational pathology, offering capabilities such as data-efficient learning, synthetic data augmentation, and task-oriented generation across diverse diagnostic tasks.…

Image and Video Processing · Electrical Eng. & Systems 2025-09-09 Yuan Zhang , Xinfeng Zhang , Xiaoming Qi , Xinyu Wu , Feng Chen , Guanyu Yang , Huazhu Fu

Automatic text generation based on neural language models has achieved performance levels that make the generated text almost indistinguishable from those written by humans. Despite the value that text generation can have in various…

Computation and Language · Computer Science 2022-05-02 Vijini Liyanage , Davide Buscaldi , Adeline Nazarenko

Identifying genes associated with complex human diseases is one of the main challenges of human genetics and computational medicine. To answer this question, millions of genetic variants get screened to identify a few of importance. To…

Genomics · Quantitative Biology 2015-09-01 Aziz M. Mezlini , Fabio Fuligni , Adam Shlien , Anna Goldenberg

Deep learning classifiers for characterization of whole slide tissue morphology require large volumes of annotated data to learn variations across different tissue and cancer types. As is well known, manual generation of digital pathology…

Image and Video Processing · Electrical Eng. & Systems 2019-07-10 Shahira Abousamra , Le Hou , Rajarsi Gupta , Chao Chen , Dimitris Samaras , Tahsin Kurc , Rebecca Batiste , Tianhao Zhao , Shroyer Kenneth , Joel Saltz

Recently deep learning methods, in particular, convolutional neural networks (CNNs), have led to a massive breakthrough in the range of computer vision. Also, the large-scale annotated dataset is the essential key to a successful training…

Image and Video Processing · Electrical Eng. & Systems 2020-11-17 Chang Qi , Junyang Chen , Guizhi Xu , Zhenghua Xu , Thomas Lukasiewicz , Yang Liu

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

Molecular Networks · Quantitative Biology 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Across the financial domain, researchers answer complex questions by extensively "searching" for relevant information to generate long-form reports. This workshop paper discusses automating the construction of query-specific document and…

Information Retrieval · Computer Science 2022-11-09 Iain Mackie , Jeffrey Dalton