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Cooperativity arising from local interactions in equilibrium receptor systems provides gain, but does not increase sensory performance, as measured by the signal-to-noise ratio (SNR) due to a fundamental tradeoff between gain and intrinsic…

Molecular Networks · Quantitative Biology 2013-07-12 Monica Skoge , Sahin Naqvi , Yigal Meir , Ned S. Wingreen

Using a stochastic nonlinear phase oscillator model, we study the effect of event-triggered feedback on the statistics of interevent intervals. Events are associated with the entering of a new cycle. The feedback is modeled by an…

Data Analysis, Statistics and Probability · Physics 2015-06-18 Justus A. Kromer , Benjamin Lindner , Lutz Schimansky-Geier

We investigate the optimal power allocation and optimal precoding for a multi-cell-processing (MCP) framework with limited cooperation. In particular, we consider two base stations(BSs) which maximize the achievable rate for two users…

Information Theory · Computer Science 2016-01-12 Samah A. M. Ghanem

We numerically and analytically investigate the behavior of a non-equilibrium phase transition in the second Schl\"ogl autocatalytic reaction scheme. Our model incorporates both an interaction-induced phase separation and a bifurcation in…

Statistical Mechanics · Physics 2023-11-02 Reda Tiani , Uwe C. Täuber

Bacterial quorum sensing can be engineered with a view to the design of biotechnological applications based on their intrinsic role as a means of communication. We propose the creation of a positive feedback loop that will promote the…

Cell Behavior · Quantitative Biology 2021-04-15 Daniel P. Martins , Huong Q. -O'Reilly , Lee Coffey , Paul D. Cotter , Sasitharan Balasubramaniam

In this paper, we consider a molecular diffusion based communications link that conveys information on the macro-scale (several metres). The motivation is to apply molecular-based communications to challenging electromagnetic environments.…

Networking and Internet Architecture · Computer Science 2016-11-18 Siyi Wang , Weisi Guo , Song Qiu , Mark D. McDonnell

Due to structural and functional abnormalities or genetic variations and mutations, there may be dysfunctional molecules within an intracellular signaling network that do not allow the network to correctly regulate its output molecules,…

Molecular Networks · Quantitative Biology 2020-11-23 Iman Habibi , Effat S Emamian , Osvaldo Simeone , Ali Abdi

Mutual information is a theoretically grounded metric for quantifying cellular signaling pathways. However, its measurement demands characterization of both input and output distributions, limiting practical applications. Here, we present…

Quantitative Methods · Quantitative Biology 2025-07-08 Kento Nakamura , Hajime Fukuoka , Akihiko Ishijima , Tetsuya J. Kobayashi

Feedback control is a renowned mechanism for attenuating intrinsic fluctuation in regulatory networks. However, its impact on the response sensitivity to external signals and the response timescale, which are also critical for signal…

Biological Physics · Physics 2024-10-17 Ka Kit Kong , Feng Liu

Although continuous advances in theoretical modelling of Molecular Communications (MC) are observed, there is still an insuperable gap between theory and experimental testbeds, especially at the microscale. In this paper, the development of…

Biological cells are often found to sense their chemical environment near the single-molecule detection limit. Surprisingly, this precision is higher than simple estimates of the fundamental physical limit, hinting towards active sensing…

Biological Physics · Physics 2015-11-06 Gerardo Aquino , Luke Tweedy , Doris Heinrich , Robert G. Endres

In many biological networks the responses of individual elements are ambiguous. We consider a scenario in which many sensors respond to a shared signal, each with limited information capacity, and ask that the outputs together convey as…

Biological Physics · Physics 2025-12-30 Marianne Bauer , William Bialek

The paper highlights the role of a positive feedback gating mechanism at the cellular level in the robust- ness and modulation properties of rhythmic activities at the circuit level. The results are presented in the context of half-center…

Neurons and Cognition · Quantitative Biology 2014-12-22 Julie Dethier , Guillaume Drion , Alessio Franci , Rodolphe Sepulchre

Central to the functioning of a living cell is its ability to control the readout or expression of information encoded in the genome. In many cases, a single transcription factor protein activates or represses the expression of many genes.…

Molecular Networks · Quantitative Biology 2013-05-29 Aleksandra M. Walczak , Gapser Tkacik , William Bialek

Communication systems for multicasting information and energy simultaneously to more than one user are investigated. In the system under study, a transmitter sends the same message and signal to multiple receivers over distinct and…

Information Theory · Computer Science 2019-03-15 Ting-Yi Wu , Anshoo Tandon , Lav R. Varshney , Mehul Motani

Multielectrode arrays allow recording of the activity of many single neurons, from which correlations can be calculated. The functional roles of correlations can be revealed by the measures of the information conveyed by neuronal activity;…

Statistical Mechanics · Physics 2009-09-25 Michele Bezzi , Mathew E. Diamond , Alessandro Treves

This paper considers the capacity of a diffusion-based molecular communication link assuming the receiver uses chemical reactions. The key contribution is we show that enzymatic reaction cycles, which is a class of chemical reactions…

Information Theory · Computer Science 2018-08-09 Hamdan Awan , Chun Tung Chou

Broadcast MIMO techniques can significantly increase the throughput in the downlink of cellular networks, at the price of channel state information (CSI) feedback from the mobiles, sent over the uplink. Thus, it creates a mechanism that can…

Information Theory · Computer Science 2023-07-19 Itsik Bergel , Yona Perets , Shlomo Shamai

Understanding relationship between noisy dynamics and biological network architecture is a fundamentally important question, particularly in order to elucidate how cells encode and process information. We analytically and numerically…

Molecular Networks · Quantitative Biology 2011-10-12 Jaewook Joo , Jinmyung Choi

Cells continuously sense their surroundings to detect modifications and generate responses. Very often changes in extracellular concentrations initiate signaling cascades that eventually result in changes in gene expression. Increasing…

Cell Behavior · Quantitative Biology 2024-08-27 Alan Givré , Alejandro Colman-Lerner , Silvina Ponce Dawson