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Distributed, large-scale quantum computing will need architectures that combine matter-based qubits with photonic links, but today's software stacks target either gate-based chips or linear-optical devices in isolation. We introduce Optyx,…

A concept of "evolving categories" is suggested to build a simple, scalable, mathematically consistent framework for representing in uniform way both data and algorithms. A state machine for executing algorithms becomes clear, rich and…

Data Structures and Algorithms · Computer Science 2007-05-23 Evgeny Yanenko

An open source symbolic tool for vector fields analysis 'SymFields' is developed in Python. The SymFields module is constructed upon Python symbolic module sympy, which could only conduct scaler field analysis. With SymFields module, you…

Symbolic Computation · Computer Science 2020-12-22 Nan Chu

Cooper is an open-source package for solving constrained optimization problems involving deep learning models. Cooper implements several Lagrangian-based first-order update schemes, making it easy to combine constrained optimization…

Machine Learning · Computer Science 2025-04-03 Jose Gallego-Posada , Juan Ramirez , Meraj Hashemizadeh , Simon Lacoste-Julien

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello

The emergence of CLIP has opened the way for open-world image perception. The zero-shot classification capabilities of the model are impressive but are harder to use for dense tasks such as image segmentation. Several methods have proposed…

Computer Vision and Pattern Recognition · Computer Science 2023-11-29 Monika Wysoczańska , Michaël Ramamonjisoa , Tomasz Trzciński , Oriane Siméoni

In this paper, we introduce eipy--an open-source Python package for developing effective, multi-modal heterogeneous ensembles for classification. eipy simultaneously provides both a rigorous, and user-friendly framework for comparing and…

Machine Learning · Computer Science 2024-12-11 Jamie J. R. Bennett , Aviad Susman , Yan Chak Li , Gaurav Pandey

Message Passing Interface (MPI) plays a crucial role in distributed memory parallelization across multiple nodes. However, parallelizing MPI code manually, and specifically, performing domain decomposition, is a challenging, error-prone…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-31 Nadav Schneider , Tal Kadosh , Niranjan Hasabnis , Timothy Mattson , Yuval Pinter , Gal Oren

Python libraries are widely used for machine learning and scientific computing tasks today. APIs in Python libraries are deprecated due to feature enhancements and bug fixes in the same way as in other languages. These deprecated APIs are…

Software Engineering · Computer Science 2021-05-11 Aparna Vadlamani , Rishitha Kalicheti , Sridhar Chimalakonda

Machine learning is revolutionizing image-based diagnostics in pathology and radiology. ML models have shown promising results in research settings, but their lack of interoperability has been a major barrier for clinical integration and…

Machine learning has proved to be a useful tool for extracting knowledge from scientific data in numerous research fields, including astrophysics, genomics, and molecular dynamics. Often, data sets from these research areas need to be…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-04-21 Javier Álvarez Cid-Fuentes , Pol Álvarez , Salvi Solà , Kuninori Ishii , Rafael K. Morizawa , Rosa M. Badia

Applications of category theory often involve symmetric monoidal categories (SMCs), in which abstract processes or operations can be composed in series and parallel. However, in 2020 there remains a dearth of computational tools for working…

Logic in Computer Science · Computer Science 2021-01-29 Evan Patterson , David I. Spivak , Dmitry Vagner

{\mu}Manager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments in which image acquisition and analysis are closely…

Quantitative Methods · Quantitative Biology 2024-02-12 Henry Pinkard , Nico Stuurman , Laura Waller

Presentations of categories are a well-known algebraic tool to provide descriptions of categories by means of generators, for objects and morphisms, and relations on morphisms. We generalize here this notion, in order to consider situations…

Logic in Computer Science · Computer Science 2019-03-14 Pierre-Louis Curien , Samuel Mimram

PyOD is an open-source Python toolbox for performing scalable outlier detection on multivariate data. Uniquely, it provides access to a wide range of outlier detection algorithms, including established outlier ensembles and more recent…

Machine Learning · Computer Science 2019-06-12 Yue Zhao , Zain Nasrullah , Zheng Li

This paper details the methodology behind CoPE, a policy-steerable small language model capable of fast and accurate content labeling. We present a novel training curricula called Contradictory Example Training that enables the model to…

Computation and Language · Computer Science 2025-12-23 Samidh Chakrabarti , David Willner , Kevin Klyman , Tiffany Saade , Emily Capstick , Sabina Nong

We introduce SpreadPy as a Python library for simulating spreading activation in cognitive single-layer and multiplex networks. Our tool is designed to perform numerical simulations testing structure-function relationships in cognitive…

Computation and Language · Computer Science 2025-07-15 Salvatore Citraro , Edith Haim , Alessandra Carini , Cynthia S. Q. Siew , Giulio Rossetti , Massimo Stella

We introduce Repro, an open-source library which aims at improving the reproducibility and usability of research code. The library provides a lightweight Python API for running software released by researchers within Docker containers which…

Computation and Language · Computer Science 2022-05-02 Daniel Deutsch , Dan Roth

Monads govern computational side-effects in programming semantics. They can be combined in a ''bottom-up'' way to handle several instances of such effects. Indexed monads and graded monads do this in a modular way. Here, instead, we equip…

Logic in Computer Science · Computer Science 2021-08-05 Carmen Constantin , Nuiok Dicaire , Chris Heunen

We introduce the first, general purpose, slice sampling inference engine for probabilistic programs. This engine is released as part of StocPy, a new Turing-Complete probabilistic programming language, available as a Python library. We…

Artificial Intelligence · Computer Science 2015-01-21 Razvan Ranca , Zoubin Ghahramani