Related papers: Point configurations, phylogenetic trees, and diss…
Phylogenomics is a new field which applies to tools in phylogenetics to genome data. Due to a new technology and increasing amount of data, we face new challenges to analyze them over a space of phylogenetic trees. Because a space of…
Extreme value statistics is the max analogue of classical statistics, while tropical geometry is the max analogue of classical geometry. In this paper, we review recent work where insights from tropical geometry were used to develop new,…
In this research article, we discuss two topics. Firstly, we introduce SCC-Map and $\phi$-contraction type $T$-coupling. By using these two definitions, we generalize $\phi$-contraction type coupling given by H. Aydi et al. [3] to…
We investigate static cylindrical solutions within an extended theory of modified gravity. By incorporating various coupling functions through a straightforward boost symmetry approach, we establish the equations of motion in a…
A classical problem in phylogenetic tree analysis is to decide whether there is a phylogenetic tree $T$ that contains all information of a given collection $\cP$ of phylogenetic trees. If the answer is "yes" we say that $\cP$ is compatible…
We investigate, using purely combinatorial methods, structural and algorithmic properties of linear equivalence classes of divisors on tropical curves. In particular, an elementary proof of the Riemann-Roch theorem for tropical curves,…
We describe Galois connections which arise between two kinds of combinatorial structures, both of which generalize trees with labelled leaves, and then apply those connections to a family of polytopes. The graphs we study can be imbued with…
We attempt to shed new light on the notion of 'tree-like' metric spaces by focusing on an approach that does not use the four-point condition. Our key question is: Given metric space $M$ on $n$ points, when does a fully labelled…
Tree decompositions were developed by Robertson and Seymour. Since then algorithms have been developed to solve intractable problems efficiently for graphs of bounded treewidth. In this paper we extend tree decompositions to allow cycles to…
The objective of this paper is to lay out the algebraic theory of supertropical vector spaces and linear algebra, utilizing the key antisymmetric relation of ``ghost surpasses.''Special attention is paid to the various notions of ``base,''…
In this paper we prove a combinatorial theorem for finite labellings of trees, and show that it is equivalent to a theorem for finite covers of metric trees and a fixed point theorem on metric trees. We trace how these connections mimic the…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
We consider the problem of building inhomogeneous cosmological models in scalar-tensor theories of gravity. This starts by splitting the field equations of these theories into constraint and evolution equations, and then proceeds by…
Tropical mathematics is used to establish a correspondence between certain microscopic and macroscopic objects in statistical models. Tropical algebra gives a common framework for macrosystems (subsets) and their elementary constituents…
Scalar perturbations of Friedmann-Lemaitre cosmologies can be analyzed in a variety of ways using Einstein's field equations, the Ricci and Bianchi identities, or the conservation equations for the stress-energy tensor, and possibly…
Classification of gene trees is an important task both in the analysis of multi-locus phylogenetic data, and assessment of the convergence of Markov Chain Monte Carlo (MCMC) analyses used in Bayesian phylogenetic tree reconstruction. The…
Asymptotic analysis on some statistical properties of the random binary-tree model is developed. We quantify a hierarchical structure of branching patterns based on the Horton-Strahler analysis. We introduce a transformation of a binary…
Species tree estimation is a complex problem, due to the fact that different parts of the genome can have different evolutionary histories than the genome itself. One of the causes for this discord is incomplete lineage sorting (also called…
We study the inverse problem of recovering a tree graph together with the weights on its edges (equivalently a metric tree) from the knowledge of the Dirichlet-to-Neumann matrix associated with the Laplacian. We prove an explicit formula…
In this note I present some properties of sub-Laplaceans associated with a collection of smooth vector fields satisfying H\"ormander's finite rank assumption. One notable aspect of the paper is the development of the fractional powers of…