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A compressed self-index stores a string in compressed form while supporting locate queries without decompression. For highly repetitive strings (arising in web crawls, versioned documents, and genomic collections), static self-indexes can…

Data Structures and Algorithms · Computer Science 2026-04-29 Takaaki Nishimoto , Yasuo Tabei

It is becoming increasingly difficult to improve the performance of a a single process (thread) on a computer due to physical limitations. Modern systems use multi-core processors in which multiple processes (threads) may run concurrently.…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-11-05 Jordan Malek

The problem of storing a set of strings --- a string dictionary --- in compact form appears naturally in many cases. While classically it has represented a small part of the whole data to be processed (e.g., for Natural Language processing…

Data Structures and Algorithms · Computer Science 2011-01-31 Nieves R. Brisaboa , Rodrigo Cánovas , Miguel A. Martínez-Prieto , Gonzalo Navarro

We consider the problem of maintaining a collection of strings while efficiently supporting splits and concatenations on them, as well as comparing two substrings, and computing the longest common prefix between two suffixes. This problem…

Data Structures and Algorithms · Computer Science 2024-08-15 Zsuzsanna Lipták , Francesco Masillo , Gonzalo Navarro

We revisit the fundamental problem of dictionary look-up with mismatches. Given a set (dictionary) of $d$ strings of length $m$ and an integer $k$, we must preprocess it into a data structure to answer the following queries: Given a query…

Data Structures and Algorithms · Computer Science 2018-06-27 Paweł Gawrychowski , Gad M. Landau , Tatiana Starikovskaya

In this paper we consider the following modification of the iterative search problem. We are given a tree $T$, so that a dynamic catalog $C(v)$ is associated with every tree node $v$. For any $x$ and for any node-to-root path $\pi$ in $T$,…

Data Structures and Algorithms · Computer Science 2010-07-21 Yakov Nekrich

Recent computational strategies based on screening tests have been proposed to accelerate algorithms addressing penalized sparse regression problems such as the Lasso. Such approaches build upon the idea that it is worth dedicating some…

Machine Learning · Statistics 2015-10-28 Antoine Bonnefoy , Valentin Emiya , Liva Ralaivola , Rémi Gribonval

The dictionary matching problem is to locate occurrences of any pattern among a set of patterns in a given text. Massive data sets abound and at the same time, there are many settings in which working space is extremely limited. We…

Data Structures and Algorithms · Computer Science 2013-01-29 Shoshana Marcus Dina Sokol

Global constraints proved themselves to be an efficient tool for modelling and solving large-scale real-life combinatorial problems. They encapsulate a set of binary constraints and using global reasoning about this set they filter the…

Programming Languages · Computer Science 2007-05-23 Roman Bartak

The Suffix Array $SA_S[1\ldots n]$ of an $n$-length string $S$ is a lexicographically sorted array of the suffixes of $S$. The suffix array is one of the most well known and widely used data structures in string algorithms. We present a…

Data Structures and Algorithms · Computer Science 2021-12-24 Amihood Amir , Itai Boneh

Traditional databases commonly support efficient query and update procedures that operate in time which is sublinear in the size of the database. Our goal in this paper is to take a first step toward dynamic reasoning in probabilistic…

Artificial Intelligence · Computer Science 2009-09-25 A. L. Delcher , A. J. Grove , S. Kasif , J. Pearl

We describe a new data structure for dynamic nearest neighbor queries in the plane with respect to a general family of distance functions. These include $L_p$-norms and additively weighted Euclidean distances. Our data structure supports…

Computational Geometry · Computer Science 2020-10-02 Haim Kaplan , Wolfgang Mulzer , Liam Roditty , Paul Seiferth , Micha Sharir

Let $\mathcal{D}$ be a collection of $D$ documents, which are strings over an alphabet of size $\sigma$, of total length $n$. We describe a data structure that uses linear space and and reports $k$ most relevant documents that contain a…

Data Structures and Algorithms · Computer Science 2013-08-02 Gonzalo Navarro , Yakov Nekrich

We propose new succinct representations of ordinal trees, which have been studied extensively. It is known that any $n$-node static tree can be represented in $2n + o(n)$ bits and a number of operations on the tree can be supported in…

Data Structures and Algorithms · Computer Science 2010-09-27 Gonzalo Navarro , Kunihiko Sadakane

This paper proves the first super-logarithmic lower bounds on the cell probe complexity of dynamic boolean (a.k.a. decision) data structure problems, a long-standing milestone in data structure lower bounds. We introduce a new method for…

Data Structures and Algorithms · Computer Science 2017-03-13 Kasper Green Larsen , Omri Weinstein , Huacheng Yu

Dynamic trees are a well-studied and fundamental building block of dynamic graph algorithms dating back to the seminal work of Sleator and Tarjan [STOC'81, (1981), pp. 114-122]. The problem is to maintain a tree subject to online edge…

Data Structures and Algorithms · Computer Science 2023-06-16 Daniel Anderson , Guy E. Blelloch

We revisit the classic problem of simplex range searching and related problems in computational geometry. We present a collection of new results which improve previous bounds by multiple logarithmic factors that were caused by the use of…

Computational Geometry · Computer Science 2022-10-24 Timothy M. Chan , Da Wei Zheng

In this paper, we have developed a fully-dynamic algorithm for maintaining cardinality of maximum-matching in a tree using the construction of top-trees. The time complexities are as follows: 1. Initialization Time: $O(n(log(n)))$ to build…

Data Structures and Algorithms · Computer Science 2009-01-20 Manoj Gupta , Ankit Sharma

Dynamic graph storage systems are essential for real-time applications such as social networks and recommendation, where graph data continuously evolves. However, they face significant challenges in efficiently handling concurrent read and…

Databases · Computer Science 2025-07-02 Chiyu Hao , Jixian Su , Shixuan Sun , Hao Zhang , Sen Gao , Jianwen Zhao , Chenyi Zhang , Jieru Zhao , Chen Chen , Minyi Guo

In 2010, P\v{a}tra\c{s}cu proposed the following three-phase dynamic problem, as a candidate for proving polynomial lower bounds on the operational time of dynamic data structures: I: Preprocess a collection of sets $\vec{S} = S_1, \ldots ,…

Data Structures and Algorithms · Computer Science 2019-10-31 Young Kun Ko , Omri Weinstein
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