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Why, contrary to theoretical predictions, do marine microbe communities harbor tremendous phenotypic heterogeneity? How can so many marine microbe species competing in the same niche coexist? We discovered a unifying explanation for both…

Populations and Evolution · Quantitative Biology 2021-08-06 Susanne Menden-Deuer , Medet Nursultanov , Sinead Collins , Tatiana Rynearson , Julie Rowlett

Effective management of recreational fisheries requires accurate forecasting of future harvests and real-time monitoring of ongoing harvests. Traditional methods that rely on historical catch data to predict short-term harvests can be…

Quantitative Methods · Quantitative Biology 2025-04-03 A. Challen Hyman , Chloe Ramsay , Tiffanie A. Cross , Beverly Sauls , Thomas K. Frazer

Managing coastal flood risks involves choosing among portfolios of different options. Analyzing these choices typically requires a model. State-of-the-art coastal risk models provide detailed regional information, but can be difficult to…

Atmospheric and Oceanic Physics · Physics 2019-05-07 Robert L. Ceres , Chris E. Forest , Klaus Keller

Fisheries in the East China Sea (ECS) face multiple concerning trends. Aside from depleted stocks caused by overfishing, illegal encroachments by fishermen from one nation into another's legal waters are a common occurrence. This behavior…

General Economics · Economics 2022-05-03 Michael Macgregor Perry

What determines biodiversity in nature is a prominent issue in ecology, especially in biotic resource systems that are typically devoid of cross-feeding. Here, we show that by incorporating pairwise encounters among consumer individuals…

Populations and Evolution · Quantitative Biology 2025-06-18 Ju Kang , Shijie Zhang , Yiyuan Niu , Xin Wang

We present novel analytical results about ecosystem species diversity that stem from a proposed coarse grained neutral model based on birth-death processes. The relevance of the problem lies in the urgency for understanding and synthesizing…

Populations and Evolution · Quantitative Biology 2015-06-05 Samir Suweis , Andrea Rinaldo , Amos Maritan

A new model ecosystem consisting of many interacting species is introduced. The species are connected through a random matrix with a given connectivity. It is shown that the system is organized close to a boundary of marginal stability in…

adap-org · Physics 2007-05-23 Ricard V. Sole , David Alonso , Alan McKane

There has been a long-standing and at times fractious debate whether complex and large systems can be stable. In ecology, the so-called `diversity-stability debate' arose because mathematical analyses of ecosystem stability were either…

Dynamical Systems · Mathematics 2015-09-02 Paul Kirk , Delphine M. Y. Rolando , Adam L. MacLean , Michael P. H. Stumpf

We present a mathematical model of a market with $m$ shares traded across $n$ investor groups, each one with similar motivations and trading strategies. The market of each asset consists of a fixed amount of cash and shares (no additions…

Dynamical Systems · Mathematics 2026-04-17 Mario Cavani

This work addresses the challenge of providing consistent explanations for predictive models in the presence of model indeterminacy, which arises due to the existence of multiple (nearly) equally well-performing models for a given dataset…

Machine Learning · Computer Science 2023-06-14 Dan Ley , Leonard Tang , Matthew Nazari , Hongjin Lin , Suraj Srinivas , Himabindu Lakkaraju

The role of species interactions in controlling the interplay between the stability of an ecosystem and its biodiversity is still not well understood. The ability of ecological communities to recover after a small perturbation of the…

Populations and Evolution · Quantitative Biology 2016-06-15 Jacopo Grilli , Matteo Adorisio , Samir Suweis , György Barabás , Jayanth R. Banavar , Stefano Allesina , Amos Maritan

Predicting competitive outcomes typically requires fitting dynamical models to data, from which interaction strengths and coexistence indicators such as invasion criteria can be produced. Methods that allow to propagate parameter…

Populations and Evolution · Quantitative Biology 2025-04-10 Matthieu Paquet , Frédéric Barraquand

Joint Species Distribution Models are essential for understanding how ecological drivers shape species communities. However, most existing approaches are limited by rigid parametric distributions for count data and the inability to model…

Methodology · Statistics 2025-12-05 Lukas Graz , Luisa Barbanti , Roland Brandl , Torsten Hothorn

The delimitation of biological species, i.e., deciding which individuals belong to the same species and whether and how many different species are represented in a data set, is key to the conservation of biodiversity. Much existing work…

Populations and Evolution · Quantitative Biology 2025-12-15 Gabriele d'Angella , Christian Hennig

Fish stock assessment often involves manual fish counting by taxonomy specialists, which is both time-consuming and costly. We propose FishNet, an automated computer vision system for both taxonomic classification and fish size estimation…

Computer Vision and Pattern Recognition · Computer Science 2024-07-01 Moseli Mots'oehli , Anton Nikolaev , Wawan B. IGede , John Lynham , Peter J. Mous , Peter Sadowski

Eradicating hunger and malnutrition is a key development goal of the 21st century. We address the problem of optimally identifying seed varieties to reliably increase crop yield within a risk-sensitive decision-making framework.…

Machine Learning · Computer Science 2017-11-17 Huaiyang Zhong , Xiaocheng Li , David Lobell , Stefano Ermon , Margaret L. Brandeau

Cichlid fishes are one of the best model system for the study of evolution of the species. Inspired by them, in this paper we simulated the splitting of a single species into two separate ones via random mutations, with both populations…

Populations and Evolution · Quantitative Biology 2007-08-24 K. Luz-Burgoa , S. Moss de Oliveira , J. S. Sa Martins

Yield forecast is essential to agriculture stakeholders and can be obtained with the use of machine learning models and data coming from multiple sources. Most solutions for yield forecast rely on NDVI (Normalized Difference Vegetation…

Computers and Society · Computer Science 2018-10-17 Igor Oliveira , Renato L. F. Cunha , Bruno Silva , Marco A. S. Netto

Finding the model that best describes a high-dimensional dataset is a daunting task, even more so if one aims to consider all possible high-order patterns of the data, going beyond pairwise models. For binary data, we show that this task…

Artificial Intelligence · Computer Science 2024-08-28 Clélia de Mulatier , Matteo Marsili

Sellers of crop seeds need to plan for the variety and quantity of seeds to stock at least a year in advance. There are a large number of seed varieties of one crop, and each can perform best under different growing conditions. Given the…

Machine Learning · Computer Science 2021-01-13 Yunhe Feng , Wenjun Zhou
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