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Here we present the training and evaluation of NanoNER, a Named Entity Recognition (NER) model for Nanobiology. NER consists in the identification of specific entities in spans of unstructured texts and is often a primary task in Natural…

Information Retrieval · Computer Science 2024-02-07 Martin Lentschat , Cyril Labbé , Ran Cheng

Since sequential information plays an important role in modeling user behaviors, various sequential recommendation methods have been proposed. Methods based on Markov assumption are widely-used, but independently combine several most recent…

Information Retrieval · Computer Science 2016-09-20 Qiang Liu , Shu Wu , Diyi Wang , Zhaokang Li , Liang Wang

Recent Named Entity Recognition (NER) advancements have significantly enhanced text classification capabilities. This paper focuses on spoken NER, aimed explicitly at spoken document retrieval, an area not widely studied due to the lack of…

Computation and Language · Computer Science 2024-09-12 Moncef Benaicha , David Thulke , M. A. Tuğtekin Turan

Natural language tasks like Named Entity Recognition (NER) in the clinical domain on non-English texts can be very time-consuming and expensive due to the lack of annotated data. Cross-lingual transfer (CLT) is a way to circumvent this…

Computation and Language · Computer Science 2023-06-08 Xavier Fontaine , Félix Gaschi , Parisa Rastin , Yannick Toussaint

Developing high-performance entity normalization algorithms that can alleviate the term variation problem is of great interest to the biomedical community. Although deep learning-based methods have been successfully applied to biomedical…

Information Retrieval · Computer Science 2019-08-12 Zongcheng Ji , Qiang Wei , Hua Xu

Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

Computation and Language · Computer Science 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Named Entity Recognition (NER) is the task of identifying spans that represent entities in sentences. Whether the entity spans are nested or discontinuous, the NER task can be categorized into the flat NER, nested NER, and discontinuous NER…

Computation and Language · Computer Science 2021-06-03 Hang Yan , Tao Gui , Junqi Dai , Qipeng Guo , Zheng Zhang , Xipeng Qiu

Training a neural network-based biomedical named entity recognition (BioNER) model usually requires extensive and costly human annotations. While several studies have employed multi-task learning with multiple BioNER datasets to reduce…

Computation and Language · Computer Science 2024-12-31 Yu Yin , Hyunjae Kim , Xiao Xiao , Chih Hsuan Wei , Jaewoo Kang , Zhiyong Lu , Hua Xu , Meng Fang , Qingyu Chen

Named entity recognition (NER) is a fundamental and important task in NLP, aiming at identifying named entities (NEs) from free text. Recently, since the multi-head attention mechanism applied in the Transformer model can effectively…

Computation and Language · Computer Science 2022-05-17 Jinpeng Hu , Yaling Shen , Yang Liu , Xiang Wan , Tsung-Hui Chang

Named Entity Recognition (NER) is an essential precursor task for many natural language applications, such as relation extraction or event extraction. Much of the NER research has been done on datasets with few classes of entity types (e.g.…

Computation and Language · Computer Science 2020-09-17 Parul Awasthy , Taesun Moon , Jian Ni , Radu Florian

In this work, we present the Grounded Recurrent Neural Network (GRNN), a recurrent neural network architecture for multi-label prediction which explicitly ties labels to specific dimensions of the recurrent hidden state (we call this…

Machine Learning · Statistics 2017-05-25 Ankit Vani , Yacine Jernite , David Sontag

We present a novel recurrent neural network (RNN) based model that combines the remembering ability of unitary RNNs with the ability of gated RNNs to effectively forget redundant/irrelevant information in its memory. We achieve this by…

Machine Learning · Computer Science 2017-10-26 Li Jing , Caglar Gulcehre , John Peurifoy , Yichen Shen , Max Tegmark , Marin Soljačić , Yoshua Bengio

Named Entity Recognition (NER) is a challenging and widely studied task that involves detecting and typing entities in text. So far,NER still approaches entity typing as a task of classification into universal classes (e.g. date, person, or…

Computation and Language · Computer Science 2023-02-22 Tristan Luiggi , Laure Soulier , Vincent Guigue , Siwar Jendoubi , Aurélien Baelde

Clinical notes in electronic health records contain highly heterogeneous writing styles, including non-standard terminology or abbreviations. Using these notes in predictive modeling has traditionally required preprocessing (e.g. taking…

Machine Learning · Computer Science 2019-11-18 Jonas Kemp , Alvin Rajkomar , Andrew M. Dai

Clinical Named Entity Recognition (CNER) aims to identify and classify clinical terms such as diseases, symptoms, treatments, exams, and body parts in electronic health records, which is a fundamental and crucial task for clinical and…

Computation and Language · Computer Science 2018-11-28 Jiahui Qiu , Qi Wang , Yangming Zhou , Tong Ruan , Ju Gao

Cross-lingual named entity recognition (NER) suffers from data scarcity in the target languages, especially under zero-shot settings. Existing translate-train or knowledge distillation methods attempt to bridge the language gap, but often…

Computation and Language · Computer Science 2022-11-18 Ran Zhou , Xin Li , Lidong Bing , Erik Cambria , Luo Si , Chunyan Miao

With increasing applications in areas such as biomedical information extraction pipelines and social media analytics, Named Entity Recognition (NER) has become an indispensable tool for knowledge extraction. However, with the gradual shift…

Computation and Language · Computer Science 2022-06-30 Supriti Vijay , Aman Priyanshu

Recent advances in prompt-based learning have shown strong results on few-shot text classification by using cloze-style templates. Similar attempts have been made on named entity recognition (NER) which manually design templates to predict…

Computation and Language · Computer Science 2022-04-01 Dong-Ho Lee , Akshen Kadakia , Kangmin Tan , Mahak Agarwal , Xinyu Feng , Takashi Shibuya , Ryosuke Mitani , Toshiyuki Sekiya , Jay Pujara , Xiang Ren

Cross-lingual model transfer is a compelling and popular method for predicting annotations in a low-resource language, whereby parallel corpora provide a bridge to a high-resource language and its associated annotated corpora. However,…

Computation and Language · Computer Science 2017-05-02 Meng Fang , Trevor Cohn

Deep learning models exhibit limited generalizability across different domains. Specifically, transferring knowledge from available entangled domain features(source/target domain) and categorical features to new unseen categorical features…

Computer Vision and Pattern Recognition · Computer Science 2020-03-03 Qingjie Meng , Daniel Rueckert , Bernhard Kainz