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The gut microbiome plays a crucial role in human health, yet the mechanisms underlying host-microbiome interactions remain unclear, limiting its translational potential. Recent microbiome multiomics studies, particularly paired…

Methodology · Statistics 2025-04-09 Haoran Shi , Yue Wang , Dan Cheng

The stellar population of the Milky Way bulge is thoroughly studied, with a plethora of measurements from virtually the full suite of instruments available to astronomers. It is thus perhaps surprising that alongside well-established…

Solar and Stellar Astrophysics · Physics 2016-07-06 David M. Nataf

The fact that the clustering of dark matter halos depends not only on their mass, but also the formation epoch, is a prominent, albeit subtle, feature of the cold dark matter structure formation theory, and is known as assembly bias. At low…

Biology is full of intricate molecular structures whose geometries are inextricably linked to their function. Many of these structures exhibit varying curvature, such as the helical structure of the bacterial flagellum, which is critical…

We aim to determine unique features that characterise the past evolution of the progenitor of the Helmi streams through the analysis of star formation histories (SFHs). From the 5D {\it Gaia} EDR3 dataset, we extracted local samples of…

Astrophysics of Galaxies · Physics 2022-12-21 T. Ruiz-Lara , A. Helmi , C. Gallart , F. Surot , S. Cassisi

Background: In the metagenome assembly of a microbiome community, we may think abundant species would be easier to assemble due to their deeper coverage. However, this conjucture is rarely tested. We often do not know how many abundant…

Genomics · Quantitative Biology 2022-11-23 Xiaowen Feng , Heng Li

The current global food system produces substantial waste and carbon emissions while exacerbating the effects of global hunger and protein deficiency. This study aims to address these challenges by exploring the use of lignocellulosic…

Biological Physics · Physics 2024-07-02 Mason Banks , Mark Taylor , Miao Guo

Computer running human machine interfaces are fast supplanting conventional hardware dedicated to monitoring and supervising tasks. This kind of approach was successfully employed to develop a new monitoring and control software, running on…

Instrumentation and Detectors · Physics 2016-06-16 Marco Marceddu

We report on the global structure of the Milky Way (MW) stellar halo up to its outer boundary based on the analysis of blue-horizontal branch stars (BHBs). These halo tracers are extracted from the $(g,r,i,z)$ band multi-photometry in the…

Horizontal gene transfer is an important factor in bacterial evolution that can act across species boundaries. Yet, we know little about rate and genomic targets of cross-lineage gene transfer, and about its effects on the recipient…

Populations and Evolution · Quantitative Biology 2022-10-12 Jeffrey J. Power , Fernanda Pinheiro , Simone Pompei , Viera Kovacova , Melih Yüksel , Isabel Rathmann , Mona Förster , Michael Lässig , Berenike Maier

Since the pioneering observations of Spite & Spite in 1982, the constant lithium abundance of metal-poor ([Fe/H]<-1.3) halo stars near the turnoff has been attributed a cosmological origin. Closer analysis revealed that the observed…

Astrophysics · Physics 2008-11-26 L. Piau , T. C. Beers , D. S. Balsara , T. Sivarani , J. W. Truran , J. W. Ferguson

This chapter gives a synopsis of recent approaches to model and analyse the evolution of microbial populations under selection. The first part reviews two population genetic models of Lenski's long-term evolution experiment with Escherichia…

Populations and Evolution · Quantitative Biology 2021-06-30 Ellen Baake , Anton Wakolbinger

Hydroxymethylcytosine (5hmC) methylation is known to be a possible epigenetic mark impacting genome stability. In this paper, we address the existing 5hmC measure $\Delta \beta$ and discuss its properties both analytically and empirically…

Quantitative Methods · Quantitative Biology 2017-08-18 Alla Slynko , Axel Benner

Recent studies show that the Milky Way stellar halo is composed of populations of different origins, shaped by multiple accretion events. To better understand the formation of the Milky Way and other spiral galaxies, we characterize the…

Natural bacterial habitats are often complex fluids with viscoelastic and anisotropic responses to stress; for example, they can take the form of liquid crystals (LCs), with elongated microscopic constituents that collectively align while…

Bacteria often develop distinct phenotypes to adapt to environmental stress. In particular, they can produce biofilms, dense communities of bacteria that live in a complex extracellular matrix. Bacterial biofilms provide a safe haven from…

Quantitative Methods · Quantitative Biology 2025-08-29 Stephen Williams , Daravuth Cheam , Michele K. Nishiguchi , Suzanne S. Sindi , Shilpa Khatri , Erica M. Rutter

Microbiomes are complex systems comprised of many interacting species. Species can survive harsh or changing conditions by rapid adaptation, a process accelerated by the exchange of genetic material between different species through…

Populations and Evolution · Quantitative Biology 2025-09-04 Johannes Nauta , Kaitlin A. Schaal , Ying-Jie Wang , James P. J. Hall , Shai Pilosof , Manlio De Domenico

Multiple populations in globular clusters are usually explained by the formation of stars out of material with a chemical composition that is polluted to different degrees by the ejecta of short-lived, massive stars of various type. Among…

Solar and Stellar Astrophysics · Physics 2021-06-30 Fabrice Martins , William Chantereau , Corinne Charbonnel

Near-field observations may provide tight constraints - i.e. "boundary conditions" - on any model of structure formation in the Universe. Detailed observational data have long been available for the Milky Way (e.g. Freeman $\&$…

Astrophysics of Galaxies · Physics 2015-06-16 Agostino Renda

Introduction : Mass spectrometry approaches are very attractive to detect protein panels in a sensitive and high speed way. MS can be coupled to many proteomic separation techniques. However, controlling technological variability on these…

Genomics · Quantitative Biology 2012-02-23 Pierre Grangeat , Pascal Szacherski , Laurent Gerfault , Jean-François Giovannelli