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Coalescent processes, including mutation, are derived from Moran type population models admitting large offspring numbers. Including mutation in the coalescent process allows for quantifying the turnover of alleles by computing the…

Populations and Evolution · Quantitative Biology 2012-12-11 Bjarki Eldon

We consider a metapopulation made up of $K$ demes, each containing $N$ individuals bearing a heritable quantitative trait. Demes are connected by migration and undergo independent Moran processes with mutation and selection based on trait…

Probability · Mathematics 2025-03-18 Amaury Lambert , Hélène Leman , Hélène Morlon , Josué Tchouanti

We consider an infinite-dimensional system of stochastic differential equations describing the evolution of type frequencies in a large population. The type of an individual is the number of deleterious mutations it carries, where fitness…

Probability · Mathematics 2012-10-22 P. Pfaffelhuber , P. R. Staab , A. Wakolbinger

We establish convergence to the Kingman coalescent for the genealogy of a geographically - or otherwise - structured version of the Wright-Fisher population model with fast migration. The new feature is that migration probabilities may…

Probability · Mathematics 2010-06-25 Serik Sagitov , Peter Jagers , Vladimir Vatutin

We analyze the long-term stability of a stochastic model designed to illustrate the adaptation of a population to variation in its environment. A piecewise-deterministic process modeling adaptation is coupled to a Feller logistic diffusion…

Probability · Mathematics 2021-09-14 Aurélien Velleret

In the absence of selection, the structure of allelic diversity is described by the elegant sampling formula of Ewens. This formula has helped shape our expectations of empirical patterns of molecular variation. Along with coalescent…

Populations and Evolution · Quantitative Biology 2011-05-30 Michael M. Desai , Lauren E. Nicolaisen , Aleksandra M. Walczak , Joshua B. Plotkin

Differential evolution (DE) algorithm with a small population size is called Micro-DE (MDE). A small population size decreases the computational complexity but also reduces the exploration ability of DE by limiting the population diversity.…

Neural and Evolutionary Computing · Computer Science 2017-09-22 Hojjat Salehinejad , Shahryar Rahnamayan , Hamid R. Tizhoosh

In this article, a stochastic individual-based model describing Darwinian evolution of asexual, phenotypic trait-structured population, is studied. We consider a large population with constant population size characterised by a resampling…

Probability · Mathematics 2024-07-09 Nicolas Champagnat , Vincent Hass

We study a stochastic spatial model of biological competition in which two species have the same birth and death rates, but different diffusion constants. In the absence of this difference, the model can be considered as an off-lattice…

Populations and Evolution · Quantitative Biology 2015-06-16 Simone Pigolotti , Roberto Benzi

We introduce a broad class of spatial models to describe how spatially heterogeneous populations live, die, and reproduce. Individuals are represented by points of a point measure, whose birth and death rates can depend both on spatial…

Probability · Mathematics 2024-01-02 Alison M. Etheridge , Thomas G. Kurtz , Ian Letter , Peter L. Ralph , Terence Tsui Ho Lung

We consider a integro-differential nonlinear model that describes the evolution of a population structured by a quantitative trait. The interactions between traits occur from competition for resources whose concentrations depend on the…

Analysis of PDEs · Mathematics 2011-12-05 Nicolas Champagnat , Pierre-Emmanuel Jabin

Evolutionary game theory is a mathematical approach to studying how social behaviors evolve. In many recent works, evolutionary competition between strategies is modeled as a stochastic process in a finite population. In this context, two…

Populations and Evolution · Quantitative Biology 2017-08-16 Christine Sample , Benjamin Allen

Our goal is to study the genetic composition of a population in which each individual has 2 parents, who contribute equally to the genome of their ospring. We use a biparental Moran model, which is characterized by its xed number N of…

Probability · Mathematics 2022-04-01 Camille Coron , Yves Le Jan

In this paper, we study a finite population undergoing discrete, nonoverlapping generations, that is structured into $D$ demes, each containing $N$ individuals of two possible types, $A$ and $B$, whose viability coefficients, $s_A$ and…

Populations and Evolution · Quantitative Biology 2023-11-02 Dhaker Kroumi , Sabin Lessard

The dynamics of a population undergoing selection is a central topic in evolutionary biology. This question is particularly intriguing in the case where selective forces act in opposing directions at two population scales. For example, a…

Probability · Mathematics 2017-05-03 Shishi Luo , Jonathan C. Mattingly

We study fixation probabilities for the Moran stochastic process for the evolution of a population with three or more types of individuals and frequency-dependent fitnesses. Contrarily to the case of populations with two types of…

Populations and Evolution · Quantitative Biology 2018-11-26 Eliza M. Ferreira , Armando G. M. Neves

The unwelcome evolution of malignancy during cancer progression emerges through a selection process in a complex heterogeneous population structure. In the present work, we investigate evolutionary dynamics in a phenotypically heterogeneous…

Populations and Evolution · Quantitative Biology 2018-02-07 Ali Mahdipour Shirayeh , Kamran Kaveh , Mohammad Kohandel , Siv Sivaloganathan

We identify a new natural coalescent structure, which we call the seed-bank coalescent, that describes the gene genealogy of populations under the influence of a strong seed-bank effect, where "dormant forms" of individuals (such as seeds…

Probability · Mathematics 2016-08-10 Jochen Blath , Adrián González Casanova , Noemi Kurt , Maite Wilke-Berenguer

The distributions of the times to the first common ancestor t_mrca is numerically studied for an ecological population model, the extended Moran model. This model has a fixed population size N. The number of descendants is drawn from a beta…

Populations and Evolution · Quantitative Biology 2018-10-30 Alexander K. Hartmann , Thierry E. Huillet

We investigate a simple quantitative genetics model subjet to a gradual environmental change from the viewpoint of the phylogenies of the living individuals. We aim to understand better how the past traits of their ancestors are shaped by…

Probability · Mathematics 2021-04-22 Vincent Calvez , Benoît Henry , Sylvie Méléard , Viet Chi Tran