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We investigate the conformations of DNA-like stiff chains, characterized by contour length ($L$) and persistence length ($l_p$), in a variety of crowded environments containing mono disperse soft spherical (SS) and spherocylindrical (SC)…

Soft Condensed Matter · Physics 2016-12-28 Hongsuk Kang , Ngo Minh Toan , Changbong Hyeon , D. Thirumalai

We present a framework for systems in which diffusion-advection transport of a tracer substance in a mobile zone is interrupted by trapping in an immobile zone. Our model unifies different model approaches based on distributed-order…

Statistical Mechanics · Physics 2022-04-05 T. J. Doerries , A. V. Chechkin , R. Schumer , R. Metzler

Recent Molecular Dynamics simulations of glass-forming liquids revealed superdiffusive fluctuations associated with the position of a tracer particle (TP) driven by an external force. Such anomalous response, whose mechanism remains…

We study the diffusion and submonolayer spreading of chainlike molecules on surfaces. Using the fluctuating bond model we extract the collective and tracer diffusion coefficients D_c and D_t with a variety of methods. We show that…

Condensed Matter · Physics 2009-10-28 T. Ala-Nissila , S. Herminghaus , T. Hjelt , P. Leiderer

We study the diffusivity of a tagged particle in a binary mixture of Brownian particles with non-reciprocal interactions. Numerical simulations reveal that, for a broad class of interaction potentials, non-reciprocity can significantly…

We formulate a scaling theory for the long-time diffusive motion in a space occluded by a high density of moving obstacles in dimensions 1, 2 and 3. Our tracers diffuse anomalously over many decades in time, before reaching a diffusive…

Statistical Mechanics · Physics 2024-10-22 H. Bendekgey , G. Huber , D. Yllanes

Odd-diffusive systems, characterised by broken time-reversal and/or parity symmetry, have recently been shown to display counterintuitive features such as interaction-enhanced dynamics in the dilute limit. Here we we extend the…

Statistical Mechanics · Physics 2024-11-26 Pietro Luigi Muzzeddu , Erik Kalz , Andrea Gambassi , Abhinav Sharma , Ralf Metzler

We investigate aggregation and fragmentation dynamics of tracers and inertial aggregates in random flows leading to steady state size distributions. Our objective is to elucidate the impact of changes in aggregation rates, due to…

Fluid Dynamics · Physics 2017-06-19 Ksenia Guseva , Ulrike Feudel

The influence of crowding on the diffusion of tagged particles in a dense medium is investigated in the framework of a mean-field model, derived in the continuum limit from a microscopic stochastic process with exclusion. The probability…

Statistical Mechanics · Physics 2015-06-19 Marta Galanti , Duccio Fanelli , Amos Maritan , Francesco Piazza

Tracer diffusion in single-file systems, where particles are restricted to move on a line without passing each other, has been a fertile ground to investigate anomalous diffusion and strong memory effects. While the long-time behavior of…

Statistical Mechanics · Physics 2025-05-28 Alexis Poncet , Aurélien Grabsch , Olivier Bénichou

Polymer translocation in crowded environments is a ubiquitous phenomenon in biological systems. We studied polymer translocation through a pore in free, one-sided (asymmetric), and two-sided (symmetric) crowded environments. Extensive…

Soft Condensed Matter · Physics 2024-03-01 Vrinda Garg , Rejoy Mathew , Riyan Ibrahim , Kulveer Singh , Surya K. Ghosh

We study a minimal model of self-propelled particle in a crowded single-file environment. We extend classical models of exclusion processes (previously analyzed for diffusive and driven tracer particles) to the case where the tracer…

Statistical Mechanics · Physics 2018-12-26 Thibault Bertrand , Pierre Illien , Olivier Bénichou , Raphaël Voituriez

Langevin simulations provide an effective way to study collective effects of Brownian particles immersed in a two-dimensional periodic potential. In this paper, we concentrate essentially on the behaviour of the tracer (DTr) and bulk (DB)…

Statistical Mechanics · Physics 2015-05-13 S. Zayzoune , M. Mazroui , Y. Boughaleb , A. Kara

We apply macroscopic fluctuation theory to study the diffusion of a tracer in a one-dimensional interacting particle system with excluded mutual passage, known as single-file diffusion. In the case of Brownian point particles with hard-core…

Statistical Mechanics · Physics 2014-11-18 P. L. Krapivsky , Kirone Mallick , Tridib Sadhu

We present a study of the mixing properties of the simulated intra cluster Medium, using tracers particles that are advected by the gas flow during the evolution of cosmic structures. Using a sample of seven galaxy clusters (with masses in…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-14 F. Vazza , C. Gheller , G. Brunetti

The standard setup for single-file diffusion is diffusing particles in one dimension which cannot overtake each other, where the dynamics of a tracer (tagged) particle is of main interest. In this article we generalise this system and…

Statistical Mechanics · Physics 2015-06-18 Robin Forsling , Lloyd Sanders , Tobias Ambjörnsson , Ludvig Lizana

We study the intrinsic friction of monolayers adsorbed on solid surfaces from a gas phase or vapor. Within the framework of the Langmuir model of delocalized adsorption, we calculate the resistance offered by the mobile adsorbate's…

Statistical Mechanics · Physics 2009-10-31 O. Benichou , A. M. Cazabat , J. De Coninck , M. Moreau , G. Oshanin

Steady state properties of a driven tracer moving in a narrow two dimensional (2D) channel of quiescent medium are studied. The tracer drives the system out of equilibrium, perturbs the density and pressure fields, and gives the bath…

Statistical Mechanics · Physics 2017-01-11 J. Cividini , D. Mukamel , H. A. Posch

We employ computer simulations to study the dynamics of a self-propelled spherical tracer particle in a viscoelastic medium, made of a long polymer chain. Here, the interplay between viscoelasticity, stickiness, and activity…

Soft Condensed Matter · Physics 2022-12-16 Ramanand Singh Yadav , Chintu Das , Rajarshi Chakrabarti

Diffusion in the crowded environments of the biological membranes or materials interfaces often involves intermittent binding to surface proteins or defects. To account for this situation we study a 2-dimensional lattice gas in a field of…

Soft Condensed Matter · Physics 2021-06-25 Mislav Cvitković , Dipanwita Ghanti , Niklas Raake , Ana-Sunčana Smith