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We prove the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile Assembly Model, when restricted to…

Computational Complexity · Computer Science 2015-07-31 Pierre-Étienne Meunier , Damien Regnault

We prove a result which strongly hints at the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile…

Computational Complexity · Computer Science 2016-10-28 Pierre-Étienne Meunier , Damien Regnault

We prove a negative result on the power of a model of algorithmic self-assembly for which it has been notoriously difficult to find general techniques and results. Specifically, we prove that Winfree's abstract Tile Assembly Model, when…

Computational Complexity · Computer Science 2013-04-11 Pierre-Étienne Meunier , Matthew J. Patitz , Scott M. Summers , Guillaume Theyssier , Andrew Winslow , Damien Woods

The field of algorithmic self-assembly is concerned with the computational and expressive power of nanoscale self-assembling molecular systems. In the well-studied cooperative, or temperature 2, abstract tile assembly model it is known that…

Computational Complexity · Computer Science 2017-05-31 Pierre-Étienne Meunier , Damien Woods

We show the first asymptotically efficient constructions in the so-called "noncooperative planar tile assembly" model. Algorithmic self-assembly is the study of the local, distributed, asynchronous algorithms ran by molecules to…

Computational Complexity · Computer Science 2021-07-19 Pierre-Etienne Meunier , Damien Regnault

We show the first non-trivial positive algorithmic results (i.e. programs whose output is larger than their size), in a model of self-assembly that has so far resisted many attempts of formal analysis or programming: the planar…

Computational Geometry · Computer Science 2014-07-11 Pierre-Étienne Meunier

We prove that the number of tile types required to build squares of size n x n, in Winfree's abstract Tile Assembly Model, when restricted to using only non-cooperative tile bindings, is at least 2n-1, which is also the best known upper…

Computational Complexity · Computer Science 2013-12-10 Pierre-Étienne Meunier

In the abstract Tile Assembly Model (aTAM) square tiles self-assemble, autonomously binding via glues on their edges, to form structures. Algorithmic aTAM systems can be designed in which the patterns of tile attachments are forced to…

Emerging Technologies · Computer Science 2022-11-10 Andrew Alseth , Matthew J. Patitz

We consider non-cooperative binding, so-called 'temperature 1', in deterministic or directed (called here confluent) tile self-assembly systems in two dimensions and show a necessary and sufficient condition for such system to have an…

Computational Complexity · Computer Science 2022-02-11 Jérôme Durand-Lose , Hendrik Jan Hoogeboom , Nataša Jonoska

Winfree's abstract Tile Assembly Model (aTAM) is a model of molecular self-assembly of DNA complexes known as tiles, which float freely in solution and attach one at a time to a growing "seed" assembly based on specific binding sites on…

Computational Complexity · Computer Science 2015-03-17 Ho-Lin Chen , David Doty , Shinnosuke Seki

The abstract tile assembly model (aTam) is a model of DNA self-assembly. Most of the studies focus on cooperative aTAM where a form of synchronization between the tiles is possible. Simulating Turing machines is achievable in this context.…

Computational Complexity · Computer Science 2026-05-11 Sergiu Ivanov , Damien Regnault

In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles…

Emerging Technologies · Computer Science 2014-03-10 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Scott M. Summers

In the abstract Tile Assembly Model, self-assembling systems consisting of tiles of different colors can form structures on which colored patterns are ``painted.'' We explore the complexity, in terms of the numbers of unique tile types…

Emerging Technologies · Computer Science 2024-03-12 Phillip Drake , Matthew J. Patitz , Scott M. Summers , Tyler Tracy

We investigate the power of the Wang tile self-assembly model at temperature 1, a threshold value that permits attachment between any two tiles that share even a single bond. When restricted to deterministic assembly in the plane, no…

Computational Complexity · Computer Science 2015-03-13 Matthew Cook , Yunhui Fu , Robert T. Schweller

In this paper we explore the power of geometry to overcome the limitations of non-cooperative self-assembly. We define a generalization of the abstract Tile Assembly Model (aTAM), such that a tile system consists of a collection of…

Emerging Technologies · Computer Science 2014-08-20 Sándor P. Fekete , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Robert T. Schweller

The connection between self-assembly and computation suggests that a shape can be considered the output of a self-assembly ``program,'' a set of tiles that fit together to create a shape. It seems plausible that the size of the smallest…

Computational Complexity · Computer Science 2008-06-22 David Soloveichik , Erik Winfree

We introduce a new model of algorithmic tile self-assembly called size-dependent assembly. In previous models, supertiles are stable when the total strength of the bonds between any two halves exceeds some constant temperature. In this…

Computational Geometry · Computer Science 2015-09-24 Sándor P. Fekete , Robert T. Schweller , Andrew Winslow

We investigate a fundamental question regarding a benchmark class of shapes in one of the simplest, yet most widely utilized abstract models of algorithmic tile self-assembly. Specifically, we study the directed tile complexity of a $k…

Data Structures and Algorithms · Computer Science 2020-07-23 David Furcy , Scott M. Summers , Logan Withers

Tile-based self-assembly systems are capable of universal computation and algorithmically-directed growth. Systems capable of such behavior typically make use of "glue cooperation" in which the glues on at least $2$ sides of a tile must…

Emerging Technologies · Computer Science 2019-03-15 Daniel Hader , Matthew J. Patitz

Tile Automata is a recently defined model of self-assembly that borrows many concepts from cellular automata to create active self-assembling systems where changes may be occurring within an assembly without requiring attachment. This model…

Formal Languages and Automata Theory · Computer Science 2022-11-28 Robert M. Alaniz , David Caballero , Sonya C. Cirlos , Timothy Gomez , Elise Grizzell , Andrew Rodriguez , Robert Schweller , Armando Tenorio , Tim Wylie
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