Related papers: A new 1.375-approximation algorithm for Sorting By…
In this paper we focus on problems which do not admit a constant-factor approximation in polynomial time and explore how quickly their approximability improves as the allowed running time is gradually increased from polynomial to…
We study several questions related to diversifying search results. We give improved approximation algorithms in each of the following problems, together with some lower bounds. - We give a polynomial-time approximation scheme (PTAS) for a…
Stochastic reduced-order modeling based on time-dependent bases (TDBs) has proven successful for extracting and exploiting low-dimensional manifold from stochastic partial differential equations (SPDEs). The nominal computational cost of…
Unbalanced translocations are among the most frequent chromosomal alterations, accounted for 30\% of all losses of heterozygosity, a major genetic event causing inactivation of tumor suppressor genes. Despite of their central role in…
We give a reduction from $(1+\varepsilon)$-approximate Earth Mover's Distance (EMD) to $(1+\varepsilon)$-approximate Closest Pair (CP). As a consequence, we improve the fastest known approximation algorithm for high-dimensional EMD. Here,…
Many recent approximation algorithms for different variants of the traveling salesman problem (asymmetric TSP, graph TSP, s-t-path TSP) exploit the well-known fact that a solution of the natural linear programming relaxation can be written…
In the snippets problem, the goal is to preprocess text $T$ so that given two patterns $P_1$ and $P_2$, one can locate the occurrences of the two patterns in $T$ that are closest to each other, or report their distance. Kopelowitz and…
We present a scalable underapproximation of the terminal hitting time stochastic reach-avoid probability at a given initial condition, for verification of high-dimensional stochastic LTI systems. While several approximation techniques have…
For a given graph $G$, a "hopset" $H$ with hopbound $\beta$ and stretch $\alpha$ is a set of edges such that between every pair of vertices $u$ and $v$, there is a path with at most $\beta$ hops in $G \cup H$ that approximates the distance…
In the present article we study strong approximation of solutions of scalar stochastic differential equations (SDEs) with bounded and $\alpha$-H\"older continuous drift coefficient and constant diffusion coefficient at time point $1$.…
The Sparsest Permutation (SP) algorithm is accurate but limited to about 9 variables in practice; the Greedy Sparest Permutation (GSP) algorithm is faster but less weak theoretically. A compromise can be given, the Best Order Score Search,…
We study a combinatorial problem arising from microarrays synthesis. The synthesis is done by a light-directed chemical process. The objective is to minimize unintended illumination that may contaminate the quality of experiments.…
Sorting a permutation by reversals is a famous problem in genome rearrangements. Since 1997, quite some biological evidence were found that in many genomes the reversed regions are usually flanked by a pair of inverted repeats. This type of…
The path version of the Traveling Salesman Problem is one of the most well-studied variants of the ubiquitous TSP. Its generalization, the Multi-Path TSP, has recently been used in the best known algorithm for path TSP by Traub and Vygen…
The Traveling Salesman Problem (TSP) is among the most famous NP-hard optimization problems. We design for this problem a randomized polynomial-time algorithm that computes a (1+eps)-approximation to the optimal tour, for any fixed eps>0,…
The Earth Mover's Distance (EMD) is a state-of-the art metric for comparing discrete probability distributions, but its high distinguishability comes at a high cost in computational complexity. Even though linear-complexity approximation…
A permutation $\pi$ over alphabet $\Sigma = {1,2,3,\ldots,n}$, is a sequence where every element $x$ in $\Sigma$ occurs exactly once. $S_n$ is the symmetric group consisting of all permutations of length $n$ defined over $\Sigma$. $I_n$ =…
The paper provides a description of the two recent approximation algorithms for the Asymmetric Traveling Salesman Problem, giving the intuitive description of the works of Feige-Singh[1] and Asadpour et.al\ [2].\newline [1] improves the…
An edit distance is a measure of the minimum cost sequence of edit operations to transform one structure into another. Edit distance is most commonly encountered within the context of strings, where Wagner and Fischer's string edit distance…
Genomic distance between two genomes, i.e., the smallest number of genome rearrangements required to transform one genome into the other, is often used as a measure of evolutionary closeness of the genomes in comparative genomics studies.…