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Machine learning models have been shown to leak information violating the privacy of their training set. We focus on membership inference attacks on machine learning models which aim to determine whether a data point was used to train the…

Cryptography and Security · Computer Science 2020-09-02 Shadi Rahimian , Tribhuvanesh Orekondy , Mario Fritz

We propose a new compression scheme for genomic data given as sequence fragments called reads. The scheme uses a reference genome at the decoder side only, freeing the encoder from the burdens of storing references and performing…

Information Theory · Computer Science 2023-02-10 Yotam Gershon , Yuval Cassuto

We review a recent trend in computational systems biology which aims at using pattern recognition algorithms to infer the structure of large-scale biological networks from heterogeneous genomic data. We present several strategies that have…

Quantitative Methods · Quantitative Biology 2008-09-22 Jean-Philippe Vert

Motivation: Human genomic datasets often contain sensitive information that limits use and sharing of the data. In particular, simple anonymisation strategies fail to provide sufficient level of protection for genomic data, because the data…

Quantitative Methods · Quantitative Biology 2019-08-27 Teppo Niinimäki , Mikko Heikkilä , Antti Honkela , Samuel Kaski

In addition to secret splitting, secret reconstruction is another important component of secret sharing. In this paper, the first quantum secret reconstruction protocol based on cluster states is proposed. Before the protocol, a classical…

Quantum Physics · Physics 2023-06-16 Ruihai Ma , Fei Gao , Song Lin

In the recent past, different researchers have proposed privacy-enhancing face recognition systems designed to conceal soft-biometric attributes at feature level. These works have reported impressive results, but generally did not consider…

Computer Vision and Pattern Recognition · Computer Science 2022-05-18 Dailé Osorio-Roig , Christian Rathgeb , Pawel Drozdowski , Philipp Terhörst , Vitomir Štruc , Christoph Busch

Due to its hereditary nature, genomic data is not only linked to its owner but to that of close relatives as well. As a result, its sensitivity does not really degrade over time; in fact, the relevance of a genomic sequence is likely to be…

Cryptography and Security · Computer Science 2019-08-30 Bristena Oprisanu , Christophe Dessimoz , Emiliano De Cristofaro

Motivation: Cutting the cost of DNA sequencing technology led to a quantum leap in the availability of genomic data. While sharing genomic data across researchers is an essential driver of advances in health and biomedical research, the…

Genomics · Quantitative Biology 2022-01-03 Nour Almadhoun Alserr , Ozgur Ulusoy , Erman Ayday , Onur Mutlu

With the widespread use of biometric recognition, several issues related to the privacy and security provided by this technology have been recently raised and analysed. As a result, the early common belief among the biometrics community of…

Computer Vision and Pattern Recognition · Computer Science 2024-01-08 Marta Gomez-Barrero , Javier Galbally

In this work, we address the liability issues that may arise due to unauthorized sharing of personal data. We consider a scenario in which an individual shares his sequential data (such as genomic data or location patterns) with several…

Cryptography and Security · Computer Science 2017-08-21 Arif Yilmaz , Erman Ayday

Artificial Intelligence (AI) incorporating genetic and medical information have been applied in disease risk prediction, unveiling disease mechanism, and advancing therapeutics. However, AI training relies on highly sensitive and private…

DNA foundation models have become transformative tools in bioinformatics and healthcare applications. Trained on vast genomic datasets, these models can be used to generate sequence embeddings, dense vector representations that capture…

Genomics · Quantitative Biology 2026-03-10 Sofiane Ouaari , Jules Kreuer , Nico Pfeifer

Reconstructing training data from trained neural networks is an active area of research with significant implications for privacy and explainability. Recent advances have demonstrated the feasibility of this process for several data types.…

Machine Learning · Computer Science 2024-11-26 Ran Elbaz , Gilad Yehudai , Meirav Galun , Haggai Maron

Capturing the vast amount of meaningful information encoded in the human genome is a fascinating research problem. The outcome of these researches have significant influences in a number of health related fields --- personalized medicine,…

Cryptography and Security · Computer Science 2017-03-07 Mohammad Zahidul Hasan , Md Safiur Rahman Mahdi , Noman Mohammed

Generative models are gaining significant attention as potential catalysts for a novel industrial revolution. Since automated sample generation can be useful to solve privacy and data scarcity issues that usually affect learned biometric…

Computer Vision and Pattern Recognition · Computer Science 2024-06-24 Saverio Cavasin , Daniele Mari , Simone Milani , Mauro Conti

Generative models are increasingly used to produce privacy-preserving synthetic data as a safe alternative to sharing sensitive training datasets. However, we demonstrate that such synthetic releases can still leak information about the…

Machine Learning · Computer Science 2025-12-09 S. M. Mustaqim , Anantaa Kotal , Paul H. Yi

Motivated by the growing availability of personal genomics services, we study an information-theoretic privacy problem that arises when sharing genomic data: a user wants to share his or her genome sequence while keeping the genotypes at…

Information Theory · Computer Science 2021-10-18 Fangwei Ye , Hyunghoon Cho , Salim El Rouayheb

Cancer is a complex disease driven by genomic alterations, and tumor sequencing is becoming a mainstay of clinical care for cancer patients. The emergence of multi-institution sequencing data presents a powerful resource for learning…

Genomics · Quantitative Biology 2024-10-31 Yuan Chen , Ronglai Shen , Xiwen Feng , Katherine Panageas

In the genomic era, the identification of gene signatures associated with disease is of significant interest. Such signatures are often used to predict clinical outcomes in new patients and aid clinical decision-making. However, recent…

Methodology · Statistics 2019-03-27 Naim U. Rashid , Quefeng Li , Jen Jen Yeh , Joseph G. Ibrahim

The goal of Domain Generation Algorithm (DGA) detection is to recognize infections with bot malware and is often done with help of Machine Learning approaches that classify non-resolving Domain Name System (DNS) traffic and are trained on…

Cryptography and Security · Computer Science 2021-10-13 Benedikt Holmes , Arthur Drichel , Ulrike Meyer
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