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We obtain thermostatted ring polymer molecular dynamics (TRPMD) from exact quantum dynamics via Matsubara dynamics, a recently-derived form of linearization which conserves the quantum Boltzmann distribution. Performing a contour integral…

Chemical Physics · Physics 2016-02-03 Timothy J. H. Hele

We investigate the random close packing density, $\phi_\textrm{RCP}$, of polydisperse hard sphere systems using a theoretical framework based on the equilibrium model of crowding. We derive a closed-form solution for $\phi_\textrm{RCP}$ in…

Soft Condensed Matter · Physics 2026-05-29 Vinay Vaibhav , Carmine Anzivino , Alessio Zaccone

We investigate the conditions under which particle multiplicities in high energy collisions are Boltzmann distributed, as is the case for hadron production in e^+e^-, pp, p-pbar and heavy ion collisions. We show that the apparent…

Nuclear Theory · Physics 2009-11-06 James Hormuzdiar , Stephen D. H. Hsu , Gregory Mahlon

A relationship between the Coulomb inclusive break-up probability and the radiative capture reaction rate for weakly-bound three-body systems is established. This direct link provides a robust procedure to estimate the reaction rate for…

Nuclear Theory · Physics 2016-04-22 J. Casal , M. Rodríguez-Gallardo , J. M. Arias , J. Gómez-Camacho

This paper studies the problem of receiver modeling in molecular communication systems. We consider the diffusive molecular communication channel between a transmitter nano-machine and a receiver nano-machine in a fluid environment. The…

Emerging Technologies · Computer Science 2016-10-04 Arman Ahmadzadeh , Hamidreza Arjmandi , Andreas Burkovski , Robert Schober

The wrapped normal distribution arises when a the density of a one-dimensional normal distribution is wrapped around the circle infinitely many times. At first look, evaluation of its probability density function appears tedious as an…

Computation · Statistics 2018-01-01 Gerhard Kurz , Igor Gilitschenski , Uwe D. Hanebeck

Motivated by the recent experimental developments on ultracold molecules and atoms, we propose a simplest theoretical model to address the disassociation, reflection and transmission probability of a 1-dimensional cold molecule via quantum…

Quantum Gases · Physics 2023-07-13 Wen-Liang Li , Hai-Jing Song , Tie-Ling Song , D. L. Zhou

Certain biochemical reactions can only be triggered after binding of a sufficient number of particles to a specific target region such as an enzyme or a protein sensor. We investigate the distribution of the reaction time, i.e., the first…

Chemical Physics · Physics 2022-10-10 Denis S. Grebenkov , Aanjaneya Kumar

Recently, it became possible to experimentally generate and characterize a very thin silica system on a substrate which can be basically described as a 2D random network. The key structural properties, in particular related to the ring…

Disordered Systems and Neural Networks · Physics 2019-05-01 Projesh Kumar Roy , Andreas Heuer

Many cellular and subcellular biological processes can be described in terms of diffusing and chemically reacting species (e.g. enzymes). Such reaction-diffusion processes can be mathematically modelled using either deterministic…

Biological Physics · Physics 2015-06-26 Radek Erban , S. Jonathan Chapman

We analyze the stability of micro-domains of ligand-receptor bonds that mediate the adhesion of biological model membranes. After evaluating the effects of membrane fluctuations on the binding affinity of a single bond, we characterize the…

Soft Condensed Matter · Physics 2012-11-22 Daniel Schmidt , Timo Bihr , Udo Seifert , Ana-Sunčana Smith

The adhesion of cell membranes is mediated by the binding of membrane-anchored receptor and ligand proteins. In this article, we review recent results from simulations and theory that lead to novel insights on how the binding equilibrium…

Biomolecules · Quantitative Biology 2016-06-15 Thomas R. Weikl , Jinglei Hu , Guang-Kui Xu , Reinhard Lipowsky

We derive exact closed form expressions for the first few terms of the short-distance Taylor expansion of the one-body correlation function of the Lieb-Liniger gas. As an intermediate result we obtain the high-p asymptotics of the momentum…

Condensed Matter · Physics 2009-11-07 Maxim Olshanii , Vanja Dunjko

We show that an analogy between crowding in fluid and jammed phases of hard spheres captures the density dependence of the kissing number for a family of numerically generated jammed states. We extend this analogy to jams of mixtures of…

We study the equilibrium fluctuations of an interacting particle system evolving on the discrete ring with $N\in\mathbb N$ points, denoted by $\mathbb T_N$, and with three species of particles that we name $A,B$ and $C$, but such that at…

Probability · Mathematics 2024-08-29 Giuseppe Cannizzaro , Patricia Gonçalves , Ricardo Misturini , Alessandra Occelli

In this article, we study the kinetics of reversible ligand binding to receptors on a spherical cell surface using a self-consistent stochastic theory. Binding, dissociation, diffusion and rebinding of ligands are incorporated into the…

Subcellular Processes · Quantitative Biology 2009-11-13 Shivam Ghosh , Manoj Gopalakrishnan , Kimberly Forsten-Williams

We derive the stationary probability distribution for a non-equilibrium system composed by an arbitrary number of degrees of freedom that are subject to Gaussian colored noise and a conservative potential. This is based on a…

Statistical Mechanics · Physics 2015-06-01 Claudio Maggi , Umberto Marini Bettolo Marconi , Nicoletta Gnan , Roberto Di Leonardo

Traditional chemical kinetics may be inappropriate to describe chemical reactions in micro-domains involving only a small number of substrate and reactant molecules. Starting with the stochastic dynamics of the molecules, we derive a…

Mathematical Physics · Physics 2009-11-10 D. Holcman , Z. Schuss

The degree distribution of many biological and technological networks has been described as a power-law distribution. While the degree distribution does not capture all aspects of a network, it has often been suggested that its functional…

Molecular Networks · Quantitative Biology 2007-05-23 Michael P. H. Stumpf , Piers J. Ingram

Let $G=(V,E)$ be a random electronic network with the boundary vertices which is obtained by assigning a resistance of each edge in a random graph in $\mathbb{G}(n,p)$ and the voltages on the boundary vertices. In this paper, we prove that…

Combinatorics · Mathematics 2011-11-15 Da-Qian Qian , Xiao-Dong Zhang
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