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Related papers: Variations in Proteins Dielectric Constants

200 papers

Here we propose that the upper bound marginal stability of proteins (7.4 kcal/mol) is a universal property that includes macro-molecular complexes and is not affected by molecular changes such as mutations and Post-Translational…

Biomolecules · Quantitative Biology 2020-03-20 Osvaldo A. Martin , Jorge A. Vila

Temperature measurements of dielectric permittivity are performed for nonstoichiometric ferroelectric lead germanate Pb$_{4.95}$Ge$_3$O$_{11}$ and multiferroic solid solution [N(C$_2$H$_5$)$_4$]$_2$CoClBr$_3$. Unlike the heat capacity data,…

Materials Science · Physics 2024-01-18 I. S. Girnyk , B. I. Horon , V. B. Kapustianyk , O. S. Kushnir , R. Y. Shopa

Statistical theory of the dielectric susceptibility of polar liquid crystals is proposed. The molecules are not uniaxial but similar to cones. It is assumed that the permanent dipole moment of a molecule is parallel to the axis of the…

Soft Condensed Matter · Physics 2011-02-04 A. Kapanowski , T. Wietecha

We consider an electron-phonon system in two and three dimensions on square, hexagonal and cubic lattices. The model is a modification of the standard Holstein model where the optical branch is appropriately curved in order to have a…

Statistical Mechanics · Physics 2009-10-31 N. Macris , C. -A. Piguet

A capacitive displacement system was constructed to measure the electric-field-induced piezoelectric strain in the simple form of either a bulk or thin film. The system can determine an AC displacement of 2 pm precisely by using a lock-in…

Materials Science · Physics 2021-07-30 Desheng Fu , Eiki Kakihara

The electric dipole strength distribution in $^{40}$Ca between 5 and 25 MeV has been determined at RCNP, Osaka, from proton inelastic scattering experiments at very forward angles. Combined with total photoabsorption data at higher…

A multiple-image method is developed to accurately calculate the electrostatic interaction between neutral dielectric particles and a uniformly charged dielectric substrate. The difference in dielectric constants between the particle and…

Soft Condensed Matter · Physics 2024-12-18 Xin Li , Changhao Li , Xiangui Chen , Zaixin Wang , Sun Min , Decai Huang

A general Monte Carlo simulation method of calculating the elastic constants of polydisperse hard-sphere colloidal crystal was developed. The elastic constants of a size polydisperse hard sphere fcc crystal is calculated. The pressure and…

Soft Condensed Matter · Physics 2009-11-13 Mingcheng Yang , Hongru Ma

This paper devotes to formulating several multiscale models to study the effect of pH-dependent ionic inhomogeneity on the electrical potential distributions and the graded elastic properties of a nanoscale DNA film and the related bending…

Applied Physics · Physics 2017-06-27 Neng-Hui Zhang , Wei-Lie Meng , Cheng-Yin Zhang , Jun-Zheng Wu

We present a simple theory that uses thermodynamic parameters to predict the probability that a protein retains the wildtype structure after one or more random amino acid substitutions. Our theory predicts that for large numbers of…

Biomolecules · Quantitative Biology 2009-11-10 Jesse D. Bloom , Jonathan J. Silberg , Claus O. Wilke , D. Allan Drummond , Christoph Adami , Frances H. Arnold

Combining elastic incoherent neutron scattering experiments at different resolutions with molecular dynamics simulations, we report the observation of a protein-like dynamical transition in linear chains of Poly(N-isopropylacrylamide). We…

Soft Condensed Matter · Physics 2021-03-11 L. Tavagnacco , M. Zanatta , E. Buratti , B. Rosi , B. Frick , F. Natali , J. Ollivier , E. Chiessi , M. Bertoldo , E. Zaccarelli , A. Orecchini

Dielectric spectra are typically obtained in molecular dynamics (MD) simulations by analyzing the fluctuations, in the absence of an applied electric field, of the total dipole moment of the simulation box. We compare this standard method…

Soft Condensed Matter · Physics 2025-09-25 Marceau Hénot

The behaviour and stability of soft and biological matter depend significantly on electrostatic interactions, as particles such as proteins and colloids acquire a charge when dispersed in an electrolytic solution. A typical simplification…

Soft Condensed Matter · Physics 2025-05-09 Andraž Gnidovec , Emanuele Locatelli , Simon Čopar , Anže Božič , Emanuela Bianchi

The simplest approximation of interaction potential between amino-acids in proteins is the contact potential, which defines the effective free energy of a protein conformation by a set of amino acid contacts formed in this conformation.…

Biomolecules · Quantitative Biology 2007-05-23 Jainab Kahtun , Sagar D. Khare , Nikolay V. Dokholyan

A low-temperature dynamical transition has been reported in several proteins. We provide the first observation of a `protein-like' dynamical transition in nonbiological aqueous environments. To this aim we exploit the popular colloidal…

Ab initio calculation of dielectric response with high-accuracy electronic structure methods is a long-standing problem, for which mean-field approaches are widely used and electron correlations are mostly treated via approximated…

Chemical Physics · Physics 2024-06-25 Xiang Li , Yubing Qian , Ji Chen

We investigate proteins within heterogeneous cell membranes where non-equilibrium phenomena arises from spatial variations in concentration and temperature. We develop simulation methods building on non-equilibrium statistical mechanics to…

Soft Condensed Matter · Physics 2025-08-28 D. Jasuja , P. J. Atzberger

We suggest the nondestructive method for determination of the dielectric constant of substrate-deposited thin films by capacitance measurement with two parallel wires placed on top of the film. The exact analytical formula for the…

Mesoscale and Nanoscale Physics · Physics 2016-11-29 Svitlana Kondovych , Igor Luk'yanchuk

Electronic open-shell ground-state properties of selected alkali-metal (AM) - alkaline-earth-metal (AEM) polar molecules are investigated. We determine potential energy curves of the 2{\Sigma}+ ground state at the coupled-cluster singles…

Chemical Physics · Physics 2015-06-19 Geetha Gopakumar , Minori Abe , Masahiko Hada , Masatoshi Kajita

This Comment concerns the effective dielectric constant for 2D photonic crystal. We show that even in the limit of very high dielectric constant of photonic crystal's "atoms", static and quasistatic approaches give the same results, unlike…

Materials Science · Physics 2007-05-23 P. Halevi , A. A. Krokhin , J. Arriaga