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Monolayers of growing bacteria, confined within channel geometries, exhibit self-organization into a highly aligned laminar state along the axis of the channel. Although this phenomenon has been observed in experiments and simulations under…

Soft Condensed Matter · Physics 2024-11-04 Blake Langeslay , Will Fahy , Gabriel Juarez

We investigate experimentally and numerically the defect configurations emerging when a cholesteric liquid crystal is confined to a spherical shell. We uncover a rich scenario of defect configurations, some of them non-existent in nematic…

Soft Condensed Matter · Physics 2017-09-13 Alexandre Darmon , Michael Benzaquen , Simon Čopar , Olivier Dauchot , Teresa Lopez-Leon

We provide a comprehensive quantitative analysis of localized and extended topological defects in the steady state of 2D passive and active repulsive Brownian disk systems. We show that, both in and out-of-equilibrium, the passage from the…

Active matter is naturally out of equilibrium which results in the emergence of diverse dynamic steady states, including the omnipresent chaotic state known as the active turbulence. However, much less is known how active systems…

Soft Condensed Matter · Physics 2023-04-07 Nika Kralj , Miha Ravnik , Žiga Kos

Non-equilibrium dynamics of topological defects can be used as a fundamental propulsion mechanism in microscopic active matter. Here, we demonstrate swimming of topological defect-propelled colloidal particles in (passive) nematic fluids…

Soft Condensed Matter · Physics 2021-09-30 Tianyi Yao , Žiga Kos , Yimin Luo , Edward B. Steager , Miha Ravnik , Kathleen J. Stebe

As cells grow and divide under a given environment, they become crowded and resources are limited, as seen in bacterial biofilms and multicellular aggregates. These cells often show strong interactions through exchanging chemicals, as in…

Cell Behavior · Quantitative Biology 2017-02-08 Jumpei F Yamagishi , Nen Saito , Kunihiko Kaneko

The enteric bacterium Proteus mirabilis, which is a pathogen that forms biofilms in vivo, can swarm over hard surfaces and form concentric ring patterns in colonies. Colony formation involves two distinct cell types: swarmer cells that…

Populations and Evolution · Quantitative Biology 2015-05-28 Chuan Xue , Elena O. Budrene , Hans G. Othmer

Nonequilibrium states of quantum materials can exhibit exotic properties and enable unprecedented functionality and applications. These transient states are inherently inhomogeneous, characterized by the formation of topologically protected…

The self-propulsion of +1/2 topological defects is a hallmark of active nematic fluids, where the defects are advected by the flow field they themselves generate. In this paper we propose a minimal model for defect self-propulsion in a…

Soft Condensed Matter · Physics 2025-08-08 Fridtjof Brauns , Myles O'Leary , Arthur Hernandez , Mark J. Bowick , M. Cristina Marchetti

Colloidal inclusions in nematic fluids induce topological defects that govern their dynamics. These defects create well-understood rheological behavior in passive nematics, but the interplay between colloid-associated defects and…

Soft Condensed Matter · Physics 2025-03-26 Timofey Kozhukhov , Benjamin Loewe , Kristian Thijssen , Tyler N. Shendruk

We study dry, dense active nematics at both particle and continuous levels. Specifically, extending the Boltzmann-Ginzburg-Landau approach, we derive well-behaved hydrodynamic equations from a Vicsek-style model with nematic alignment and…

Soft Condensed Matter · Physics 2019-12-20 Aurelio Patelli , Ilyas Djafer-Cherif , Igor S. Aranson , Eric Bertin , Hugues Chaté

Immotile microbes inhabit nearly every environment on Earth, from soils and sediments to food matrices -- yet how they disperse through these physically confining environments is poorly understood. Here, we show that immotile microbial…

Polar active matter - including animal herds, aggregates of motile cells and active colloids - often forms coordinated migration patterns, such as flocking. This orderly motion can be disrupted by full-integer topological defects…

Soft Condensed Matter · Physics 2026-05-26 Luiza Angheluta , Anna Lång , Emma Lång , Stig Ove Bøe

Stable array of point defects was generated in nematic liquid crystal. Point defects with topological charge of +1 and -1 (hedgehogs) were generated in vertically aligned liquid crystal cell. The hedgehogs were arranged in square or…

Soft Condensed Matter · Physics 2019-06-18 Jieh-Wen Tsung

Active matter refers to a broad class of non-equilibrium systems where energy is continuously injected at the level of individual ``particles". These systems exhibit emergent collective behaviors that have no direct thermal-equilibrium…

Soft Condensed Matter · Physics 2026-02-10 Zihan Zheng , Cunyuan Jiang , Yangrui Chen , Matteo Baggioli , Jie Zhang

Point-like topological defects are singular configurations that occur in a variety of in and out of equilibrium systems with two-dimensional orientational order. As they are associated with a nonzero circuitation condition, the presence of…

Statistical Mechanics · Physics 2023-07-13 Jacopo Romano , Benoît Mahault , Ramin Golestanian

Cell colonies of bacteria, tumour cells and fungi, under nutrient limited growth conditions, exhibit complex branched growth patterns. In order to investigate this phenomenon we present a simple hybrid cellular automaton model of cell…

Biological Physics · Physics 2007-05-23 P. Gerlee , A. R. A Anderson

We use a continuum, two-fluid approach to study a mixture of two active nematic fluids. Even in the absence of thermodynamically-driven ordering, for mixtures of different activities we observe turbulent microphase separation, where domains…

Soft Condensed Matter · Physics 2025-02-03 Saraswat Bhattacharyya , Julia M. Yeomans

We study how confinement transforms the chaotic dynamics of bulk microtubule-based active nematics into regular spatiotemporal patterns. For weak confinements, multiple continuously nucleating and annihilating topological defects…

Topological defects are a conspicuous feature of active liquid crystals that have been associated with important morphogenetic transitions in organismal development. Robust development thus requires a tight control of the motion and…