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Long non-coding RNA, microRNA, and messenger RNA enable key regulations of various biological processes through a variety of diverse interaction mechanisms. Identifying the interactions and cross-talk between these heterogeneous RNA classes…

Molecular Networks · Quantitative Biology 2020-12-10 Nhat Tran , Jean Gao

Remote sensing scene classification deals with the problem of classifying land use/cover of a region from images. To predict the development and socioeconomic structures of cities, the status of land use in regions is tracked by the…

Computer Vision and Pattern Recognition · Computer Science 2022-01-26 Ozlem Sen , Hacer Yalim Keles

The caliber and configuration of retinal blood vessels serve as important biomarkers for various diseases and medical conditions. A thorough analysis of the retinal vasculature requires the segmentation of the blood vessels and their…

Image and Video Processing · Electrical Eng. & Systems 2025-03-13 José Morano , Guilherme Aresta , Hrvoje Bogunović

Dual graphs have been applied to model RNA secondary structures. The purpose of the paper is two-fold: we present new graph-theoretic properties of dual graphs to validate the further analysis and classification of RNAs using these…

Quantitative Methods · Quantitative Biology 2016-01-19 Louis Petingi , Tamar Schlick

Prediction of one-dimensional protein structures such as secondary structures and contact numbers is useful for the three-dimensional structure prediction and important for the understanding of sequence-structure relationship. Here we…

Biomolecules · Quantitative Biology 2007-05-23 Akira R. Kinjo , Ken Nishikawa

The Human Genome Project has led to an exponential increase in data related to the sequence, structure, and function of biomolecules. Bioinformatics is an interdisciplinary research field that primarily uses computational methods to analyze…

Biomolecules · Quantitative Biology 2024-05-14 Yanlin Zhou , Tong Zhan , Yichao Wu , Bo Song , Chenxi Shi

Land cover maps generated from semantic segmentation of high-resolution remotely sensed images have drawn mucon in the photogrammetry and remote sensing research community. Currently, massive fine-resolution remotely sensed (FRRS) images…

Computer Vision and Pattern Recognition · Computer Science 2025-06-30 Naftaly Wambugu , Ruisheng Wang , Bo Guo , Tianshu Yu , Sheng Xu , Mohammed Elhassan

Noncoding RNAs are integral to a wide range of biological processes, including translation, gene regulation, host-pathogen interactions and environmental sensing. While genomics is now a mature field, our capacity to identify noncoding RNA…

Learning discriminative feature directly on point clouds is still challenging in the understanding of 3D shapes. Recent methods usually partition point clouds into local region sets, and then extract the local region features with…

Computer Vision and Pattern Recognition · Computer Science 2020-03-24 Xinhai Liu , Zhizhong Han , Fangzhou Hong , Yu-Shen Liu , Matthias Zwicker

Relation classification is an important semantic processing task in the field of natural language processing (NLP). In this paper, we present a novel model, Structure Regularized Bidirectional Recurrent Convolutional Neural…

Computation and Language · Computer Science 2017-11-08 Ji Wen

RNA molecules are known to form complex secondary structures including pseudoknots. A systematic framework for the enumeration, classification and prediction of secondary structures is critical to determine the biological significance of…

Biomolecules · Quantitative Biology 2025-12-24 Rayan Ibrahim , Allison H. Moore

We propose rectified factor networks (RFNs) to efficiently construct very sparse, non-linear, high-dimensional representations of the input. RFN models identify rare and small events in the input, have a low interference between code units,…

Machine Learning · Computer Science 2018-01-31 Djork-Arné Clevert , Andreas Mayr , Thomas Unterthiner , Sepp Hochreiter

Text classification has been one of the major problems in natural language processing. With the advent of deep learning, convolutional neural network (CNN) has been a popular solution to this task. However, CNNs which were first proposed…

Computation and Language · Computer Science 2019-09-16 Avinash Madasu , Vijjini Anvesh Rao

This paper presents a method that can accurately detect heads especially small heads under the indoor scene. To achieve this, we propose a novel method, Feature Refine Net (FRN), and a cascaded multi-scale architecture. FRN exploits the…

Computer Vision and Pattern Recognition · Computer Science 2018-11-27 Dezhi Peng , Zikai Sun , Zirong Chen , Zirui Cai , Lele Xie , Lianwen Jin

We introduce a new table detection and structure recognition approach named RobusTabNet to detect the boundaries of tables and reconstruct the cellular structure of each table from heterogeneous document images. For table detection, we…

Computer Vision and Pattern Recognition · Computer Science 2022-09-19 Chixiang Ma , Weihong Lin , Lei Sun , Qiang Huo

Recurrent Neural Networks (RNNs) with attention mechanisms have obtained state-of-the-art results for many sequence processing tasks. Most of these models use a simple form of encoder with attention that looks over the entire sequence and…

Deep learning (DL) based semantic segmentation methods have been providing state-of-the-art performance in the last few years. More specifically, these techniques have been successfully applied to medical image classification, segmentation,…

Computer Vision and Pattern Recognition · Computer Science 2018-05-30 Md Zahangir Alom , Mahmudul Hasan , Chris Yakopcic , Tarek M. Taha , Vijayan K. Asari

In this paper, we investigate learning-based MIMO-OFDM symbol detection strategies focusing on a special recurrent neural network (RNN) -- reservoir computing (RC). We first introduce the Time-Frequency RC to take advantage of the…

Signal Processing · Electrical Eng. & Systems 2020-03-17 Zhou Zhou , Lingjia Liu , Shashank Jere , Jianzhong , Zhang , Yang Yi

Convolutional Neural Network(CNN) has been widely used for image recognition with great success. However, there are a number of limitations of the current CNN based image recognition paradigm. First, the receptive field of CNN is generally…

Computer Vision and Pattern Recognition · Computer Science 2018-03-28 Dong-Qing Zhang

The Deep Convolutional Neural Network (DCNN) is one of the most powerful and successful deep learning approaches. DCNNs have already provided superior performance in different modalities of medical imaging including breast cancer…

Computer Vision and Pattern Recognition · Computer Science 2018-11-13 Md Zahangir Alom , Chris Yakopcic , Tarek M. Taha , Vijayan K. Asari