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With the rise of deep learning technology in practical applications, Convolutional Neural Networks (CNNs) have been able to assist humans in solving many real-world problems. To enhance the performance of CNNs, numerous network…

Machine Learning · Computer Science 2024-09-10 Qi Wang , Zijun Gao , Mingxiu Sui , Taiyuan Mei , Xiaohan Cheng , Iris Li

Reservoir Computing Networks (RCNs) belong to a group of machine learning techniques that project the input space non-linearly into a high-dimensional feature space, where the underlying task can be solved linearly. Popular variants of RCNs…

Machine Learning · Computer Science 2022-05-31 Peter Steiner , Azarakhsh Jalalvand , Simon Stone , Peter Birkholz

Accurate prediction of RNA properties, such as stability and interactions, is crucial for advancing our understanding of biological processes and developing RNA-based therapeutics. RNA structures can be represented as 1D sequences, 2D…

Quantitative Methods · Quantitative Biology 2025-04-22 Junjie Xu , Artem Moskalev , Tommaso Mansi , Mangal Prakash , Rui Liao

Existing image recognition techniques based on convolutional neural networks (CNNs) basically assume that the training and test datasets are sampled from i.i.d distributions. However, this assumption is easily broken in the real world…

Computer Vision and Pattern Recognition · Computer Science 2025-12-03 Kazuki Adachi , Shin'ya Yamaguchi

Objectives To develop and validate a deep learning-based diagnostic model incorporating uncertainty estimation so as to facilitate radiologists in the preoperative differentiation of the pathological subtypes of renal cell carcinoma (RCC)…

Image and Video Processing · Electrical Eng. & Systems 2023-11-14 Ni Yao , Hang Hu , Kaicong Chen , Chen Zhao , Yuan Guo , Boya Li , Jiaofen Nan , Yanting Li , Chuang Han , Fubao Zhu , Weihua Zhou , Li Tian

An RNA sequence is a word over an alphabet on four elements $\{A,C,G,U\}$ called bases. RNA sequences fold into secondary structures where some bases match one another while others remain unpaired. Pseudoknot-free secondary structures can…

Data Structures and Algorithms · Computer Science 2018-03-28 Édouard Bonnet , Paweł Rzążewski , Florian Sikora

Residual network (ResNet) and densely connected network (DenseNet) have significantly improved the training efficiency and performance of deep convolutional neural networks (DCNNs) mainly for object classification tasks. In this paper, we…

Image and Video Processing · Electrical Eng. & Systems 2020-04-29 Mina Jafari , Dorothee Auer , Susan Francis , Jonathan Garibaldi , Xin Chen

Timely and affordable computer-aided diagnosis of retinal diseases is pivotal in precluding blindness. Accurate retinal vessel segmentation plays an important role in disease progression and diagnosis of such vision-threatening diseases. To…

Image and Video Processing · Electrical Eng. & Systems 2023-04-26 Tariq M. Khan , Syed S. Naqvi , Antonio Robles-Kelly , Imran Razzak

We present a transductive deep learning-based formulation for the sparse representation-based classification (SRC) method. The proposed network consists of a convolutional autoencoder along with a fully-connected layer. The role of the…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Mahdi Abavisani , Vishal M. Patel

In this paper, we introduce Channel-wise recurrent convolutional neural networks (RecNets), a family of novel, compact neural network architectures for computer vision tasks inspired by recurrent neural networks (RNNs). RecNets build upon…

Machine Learning · Computer Science 2020-03-23 George Retsinas , Athena Elafrou , Georgios Goumas , Petros Maragos

Semantic segmentation in high resolution remote sensing images is a fundamental and challenging task. Convolutional neural networks (CNNs), such as fully convolutional network (FCN) and SegNet, have shown outstanding performance in many…

Computer Vision and Pattern Recognition · Computer Science 2018-05-08 Lichao Mou , Xiao Xiang Zhu

The success of CNN-based architecture on image classification in learning and extracting features made them so popular these days, but the task of image classification becomes more challenging when we apply state of art models to classify…

Computer Vision and Pattern Recognition · Computer Science 2023-05-30 Ashkan Ganj , Mohsen Ebadpour , Mahdi Darvish , Hamid Bahador

Deep Convolutional Neural Networks (CNNs), such as Dense Convolutional Networks (DenseNet), have achieved great success for image representation by discovering deep hierarchical information. However, most existing networks simply stacks the…

Computer Vision and Pattern Recognition · Computer Science 2021-02-10 Zhao Zhang , Zemin Tang , Yang Wang , Zheng Zhang , Choujun Zhan , Zhengjun Zha , Meng Wang

Predicting the secondary structure of RNA is a core challenge in computational biology, essential for understanding molecular function and designing novel therapeutics. The field has evolved from foundational but accuracy-limited…

Biomolecules · Quantitative Biology 2026-05-20 Giuseppe Sacco , Giovanni Bussi , Guido Sanguinetti

The detection of nuclei and cells in histology images is of great value in both clinical practice and pathological studies. However, multiple reasons such as morphological variations of nuclei or cells make it a challenging task where…

Computer Vision and Pattern Recognition · Computer Science 2021-06-28 Yibao Sun , Xingru Huang , Huiyu Zhou , Qianni Zhang

The grade of clear cell renal cell carcinoma (ccRCC) is a critical prognostic factor, making ccRCC nuclei grading a crucial task in RCC pathology analysis. Computer-aided nuclei grading aims to improve pathologists' work efficiency while…

Image and Video Processing · Electrical Eng. & Systems 2021-06-22 Zeyu Gao , Jiangbo Shi , Xianli Zhang , Yang Li , Haichuan Zhang , Jialun Wu , Chunbao Wang , Deyu Meng , Chen Li

The discovery of nucleic acids and the structure of DNA have brought considerable advances in the understanding of life. The development of next-generation sequencing technologies has led to a large-scale generation of data, for which…

Molecular Networks · Quantitative Biology 2022-03-30 Murilo Montanini Breve , Matheus Henrique Pimenta-Zanon , Fabrício Martins Lopes

Deep convolutional neural networks (CNNs) have obtained remarkable performance in single image super-resolution (SISR). However, very deep networks can suffer from training difficulty and hardly achieve further performance gain. There are…

Image and Video Processing · Electrical Eng. & Systems 2022-11-18 Alexander Panaetov , Karim Elhadji Daou , Igor Samenko , Evgeny Tetin , Ilya Ivanov

Classifying large scale networks into several categories and distinguishing them according to their fine structures is of great importance with several applications in real life. However, most studies of complex networks focus on properties…

Computer Vision and Pattern Recognition · Computer Science 2022-09-07 Ruyue Xin , Jiang Zhang , Yitong Shao

Accurate image segmentation plays a crucial role in medical image analysis, yet it faces great challenges of various shapes, diverse sizes, and blurry boundaries. To address these difficulties, square kernel-based encoder-decoder…

Image and Video Processing · Electrical Eng. & Systems 2022-01-02 Qian Yu , Lei Qi , Luping Zhou , Lei Wang , Yilong Yin , Yinghuan Shi , Wuzhang Wang , Yang Gao