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Analysis of single-cell transcriptomics often relies on clustering cells and then performing differential gene expression (DGE) to identify genes that vary between these clusters. These discrete analyses successfully determine cell types…

Quantitative Methods · Quantitative Biology 2022-10-07 Renee S. Hoekzema , Lewis Marsh , Otto Sumray , Thomas M. Carroll , Xin Lu , Helen M. Byrne , Heather A. Harrington

scRNA-seq clustering is a critical task for analyzing single-cell RNA sequencing (scRNA-seq) data, as it groups cells with similar gene expression profiles. Transformers, as powerful foundational models, have been applied to scRNA-seq…

Machine Learning · Computer Science 2026-02-10 Zhuomin Liang , Liang Bai , Xian Yang

In this paper we propose a Bayesian nonparametric model for clustering partial ranking data. We start by developing a Bayesian nonparametric extension of the popular Plackett-Luce choice model that can handle an infinite number of choice…

Machine Learning · Statistics 2014-08-04 François Caron , Yee Whye Teh , Thomas Brendan Murphy

In the analysis of cluster data, the regression coefficients are frequently assumed to be the same across all clusters. This hampers the ability to study the varying impacts of factors on each cluster. In this paper, a semiparametric model…

Statistics Theory · Mathematics 2009-08-25 Wenyang Zhang , Jianqing Fan , Yan Sun

Support vector clustering (SVC) is a versatile clustering technique that is able to identify clusters of arbitrary shapes by exploiting the kernel trick. However, one hurdle that restricts the application of SVC lies in its sensitivity to…

Machine Learning · Computer Science 2016-08-10 Dong Huang , Chang-Dong Wang , Jian-Huang Lai , Yun Liang , Shan Bian , Yu Chen

Extracting image semantics effectively and assigning corresponding labels to multiple objects or attributes for natural images is challenging due to the complex scene contents and confusing label dependencies. Recent works have focused on…

Computer Vision and Pattern Recognition · Computer Science 2023-09-26 Leilei Ma , Dengdi Sun , Lei Wang , Haifeng Zhao , Bin Luo

Real-world datasets often combine data collected under different experimental conditions. This yields larger datasets, but also introduces spurious correlations that make it difficult to model the phenomena of interest. We address this by…

Sparse Subspace Clustering (SSC) is a popular unsupervised machine learning method for clustering data lying close to an unknown union of low-dimensional linear subspaces; a problem with numerous applications in pattern recognition and…

Machine Learning · Computer Science 2019-07-19 Manolis C. Tsakiris , Rene Vidal

Technological advances facilitate the ability to acquire multimodal data, posing a challenge for recognition systems while also providing an opportunity to use the heterogeneous nature of the information to increase the generalization…

Machine Learning · Computer Science 2024-08-06 Paweł Zyblewski , Leandro L. Minku

Extracting an understanding of the underlying system from high dimensional data is a growing problem in science. Discovering informative and meaningful features is crucial for clustering, classification, and low dimensional data embedding.…

Machine Learning · Statistics 2019-12-10 Samuel Melton , Sharad Ramanathan

Label-free single-cell imaging offers a scalable, non-invasive alternative to fluorescence-based cytometry, yet inferring molecular phenotypes directly from bright-field morphology remains challenging. We present a unified Deep Learning…

Computer Vision and Pattern Recognition · Computer Science 2026-05-15 Saqib Nazir , Ardhendu Behera

Multiple clustering aims at discovering diverse ways of organizing data into clusters. Despite the progress made, it's still a challenge for users to analyze and understand the distinctive structure of each output clustering. To ease this…

Machine Learning · Computer Science 2019-07-29 Xing Wang , Jun Wang , Carlotta Domeniconi , Guoxian Yu , Guoqiang Xiao , Maozu Guo

Bayesian clustering typically relies on mixture models, with each component interpreted as a different cluster. After defining a prior for the component parameters and weights, Markov chain Monte Carlo (MCMC) algorithms are commonly used to…

Methodology · Statistics 2024-07-30 Alexander Dombowsky , David B. Dunson

Complex network data problems are increasingly common in many fields of application. Our motivation is drawn from strategic marketing studies monitoring customer choices of specific products, along with co-subscription networks encoding…

Applications · Statistics 2018-09-11 Daniele Durante , Sally Paganin , Bruno Scarpa , David B. Dunson

The simultaneous grouping of rows and columns is an important technique that is increasingly used in large-scale data analysis. In this paper, we present a novel co-clustering method using co-variables in its construction. It is based on a…

Applications · Statistics 2018-12-21 Serge Iovleff , Seydou Syllla , Cheikh Loucoubar

The statistical analysis of group studies in neuroscience is particularly challenging due to the complex spatio-temporal nature of the data, its multiple levels and the inter-individual variability in brain responses. In this respect,…

Methodology · Statistics 2025-05-15 Nicolò Margaritella , Vanda Inácio , Ruth King

We prove the validity of using subsampling method for inference under a two-way clustered panel in which the time effects are serially correlated. Subsamples should be drawn without replacement from randomly partitioned individual index set…

Econometrics · Economics 2026-05-01 Haonan Miao

The problem of estimating parameters of a deterministic jump or piecewise linear model is considered. A subspace technique referred to as spectral clustering on subspace (SCS) algorithm is proposed to estimate a set of linear model…

Methodology · Statistics 2013-07-02 Liang Li , Wei Dong , Yindong Ji , Lang Tong

The problem of organizing data that evolves over time into clusters is encountered in a number of practical settings. We introduce evolutionary subspace clustering, a method whose objective is to cluster a collection of evolving data points…

Computer Vision and Pattern Recognition · Computer Science 2019-01-30 Abolfazl Hashemi , Haris Vikalo

In online clustering problems, there is often a large amount of uncertainty over possible cluster assignments that cannot be resolved until more data are observed. This difficulty is compounded when clusters follow complex distributions, as…

Machine Learning · Statistics 2026-04-17 Connie Trojan , Pavel Myshkov , Paul Fearnhead , James Hensman , Tom Minka , Christopher Nemeth