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The representation of complex systems as networks is inappropriate for the study of certain problems. We show several examples of social, biological, ecological and technological systems where the use of complex networks gives very limited…

Physics and Society · Physics 2013-04-02 Ernesto Estrada , Juan A. Rodriguez-Velazquez

Designing algorithms that generate networks with a given degree sequence while varying both subgraph composition and distribution of subgraphs around nodes is an important but challenging research problem. Current algorithms lack control of…

Physics and Society · Physics 2015-12-07 Martin Ritchie , Luc Berthouze , Istvan Z Kiss

Subgraphs and cycles are often used to characterize the local properties of complex networks. Here we show that the subgraph structure of real networks is highly time dependent: as the network grows, the density of some subgraphs remains…

Disordered Systems and Neural Networks · Physics 2009-11-11 Alexei Vazquez , Joao G. Oliveira , Albert-Laszlo Barabasi

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

Statistical Mechanics · Physics 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

Most of the complex social, technological and biological networks have a significant community structure. Therefore the community structure of complex networks has to be considered as a universal property, together with the much explored…

Physics and Society · Physics 2014-12-02 Ginestra Bianconi , Richard K. Darst , Jacopo Iacovacci , Santo Fortunato

Natural and man-made transport webs are frequently dominated by dense sets of nested cycles. The architecture of these networks, as defined by the topology and edge weights, determines how efficiently the networks perform their function.…

Quantitative Methods · Quantitative Biology 2016-07-27 Carl D. Modes , Marcelo O. Magnasco , Eleni Katifori

The influence of networks topology on collective properties of dynamical systems defined upon it is studied in the thermodynamic limit. A network model construction scheme is proposed where the number of links, the average eccentricity and…

Physics and Society · Physics 2015-05-25 Sarah De Nigris , Xavier Leoncini

The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

Biological Physics · Physics 2015-05-13 Sitabhra Sinha

Over the last decade, random hyperbolic graphs have proved successful in providing geometric explanations for many key properties of real-world networks, including strong clustering, high navigability, and heterogeneous degree…

Physics and Society · Physics 2023-03-01 Béatrice Désy , Patrick Desrosiers , Antoine Allard

Network embedding is a fervid topic in current networks science and observes that most real complex systems can be embedded in hidden metrics space and emerge as the geometrical property, where the geometric distance between nodes…

Physics and Society · Physics 2020-04-28 Zongning Wu , Zengru Di , Ying Fan

Complex molecules and mesoscopic structures are naturally described by general networks of elementary building blocks and tight-binding is one of the simplest quantum model suitable for studying the physical properties arising from the…

Condensed Matter · Physics 2009-11-07 P. Buonsante , R. Burioni , D. Cassi

Graph neural networks have become the default choice by practitioners for graph learning tasks such as graph classification and node classification. Nevertheless, popular graph neural network models still struggle to capture higher-order…

Machine Learning · Computer Science 2024-11-27 Davide Buffelli , Farzin Soleymani , Bastian Rieck

The force networks of different granular ensembles are defined and their topological properties studied using the tools of complex networks. In particular, for each set of grains compressed in a square box, it is introduced a force…

Disordered Systems and Neural Networks · Physics 2007-09-18 Roberto Arevalo , Iker Zuriguel , Diego Maza

We introduce a flexible setup allowing for a neural network to learn both its size and topology during the course of a standard gradient-based training. The resulting network has the structure of a graph tailored to the particular learning…

Machine Learning · Computer Science 2020-07-16 Romuald A. Janik , Aleksandra Nowak

We present a general model for the growth of weighted networks in which the structural growth is coupled with the edges' weight dynamical evolution. The model is based on a simple weight-driven dynamics and a weights' reinforcement…

Statistical Mechanics · Physics 2009-11-10 Alain Barrat , Marc Barthelemy , Alessandro Vespignani

Heterogeneous networks play a key role in the evolution of communities and the decisions individuals make. These networks link different types of entities, for example, people and the events they attend. Network analysis algorithms usually…

Computers and Society · Computer Science 2016-11-17 Rumi Ghosh , Kristina Lerman

The use of graph neural networks has produced significant advances in point cloud problems, such as those found in high energy physics. The question of how to produce a graph structure in these problems is usually treated as a matter of…

Machine Learning · Computer Science 2023-08-01 Daniel Murnane

The paper surveys recent progress in understanding geometric, topological and combinatorial properties of large simplicial complexes, focusing mainly on ampleness, connectivity and universality. In the first part of the paper we concentrate…

Combinatorics · Mathematics 2023-01-19 Michael Farber

We use network theory to study topological features in the hierarchical clustering of dark matter halos. We use public halo catalogs from cosmological N-body simulations and construct tree graphs that connect halos within main halo systems.…

Cosmology and Nongalactic Astrophysics · Physics 2024-03-22 Daneng Yang , Hai-Bo Yu

Hypergraphs, with their capacity to depict high-order relationships, have emerged as a significant extension of traditional graphs. Although Graph Neural Networks (GNNs) have remarkable performance in graph representation learning, their…

Machine Learning · Computer Science 2024-11-07 Khaled Mohammed Saifuddin , Mehmet Emin Aktas , Esra Akbas