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Several controversial issues concerning the packing of linear DNA in bacteriophages and globules are discussed. Exact relations for the osmotic pressure, capsid pressure and loading force are derived in terms of the hole size inside phages…

Soft Condensed Matter · Physics 2007-05-23 Theo Odijk

Hydrodynamics and confinement dominate bacterial mobility near solid or air-water boundaries, causing flagellated bacteria to move in circular trajectories. This phenomenon results from the counter-rotation between the bacterial body and…

Biological Physics · Physics 2018-10-09 George Araujo , Weijie Chen , Sridhar Mani , Jay X. Tang

Filamentous bio-materials such as fibrin or collagen networks exhibit an enormous stiffening of their elastic moduli upon large deformations. This pronounced nonlinear behavior stems from a significant separation between the stiffnesses…

Soft Condensed Matter · Physics 2019-05-21 Robbie Rens , Carlos Villarroel , Gustavo Düring , Edan Lerner

In this letter, we investigate the geometrically tailorable elasticity in the twisting behavior of biomimetic scale-covered slender soft substrate. Motivated by our qualitative experiments showing a significant torsional rigidity increase,…

Soft Condensed Matter · Physics 2019-09-04 Hossein Ebrahimi , Hessein Ali , Ryan Alexander Horton , Jonathan Galvez , Ali Gordon , Ranajay Ghosh

A thin circular elastic sheet floating on a drop-like liquid substrate is deformed due to incompatibility between the curved substrate and the planar sheet. We adopt a variational viewpoint by minimizing the non-convex membrane energy…

Analysis of PDEs · Mathematics 2026-02-19 Peter Bella , Carlos Román

When a ribbon or tube is twisted far enough it forms buckles and wrinkles. Its new geometry can be strikingly ordered, or hopelessly disordered. Here we study this process in a tube with hybrid boundary conditions: one end a cylinder, and…

Soft Condensed Matter · Physics 2025-11-27 Pan Dong , Nathan C. Keim , Joseph D. Paulsen

A DNA-protein complex modelled by a semiflexible chain and an attractive spherical core is studied in the situation when an external stretching force is acting on one end monomer of the chain while the other end monomer is kept fixed in…

Soft Condensed Matter · Physics 2009-11-10 Takahiro Sakaue , Hartmut Löwen

Dense, disordered packings of particles are useful models of low-temperature amorphous phases of matter, biological systems, granular media, and colloidal systems. The study of dense packings of nonspherical particles enables one to…

Soft Condensed Matter · Physics 2022-05-09 Charles Emmett Maher , Frank H. Stillinger , Salvatore Torquato

We study numerically how multiple deformable capsules squeeze into a constriction. This situation is largely encountered in microfluidic chips designed to manipulate living cells, which are soft entities. We use fully three-dimensional…

Soft Condensed Matter · Physics 2021-12-15 Clément Bielinski , Othmane Aouane , Jens Harting , Badr Kaoui

Several experiments have demonstrated the existence of an electro-mechanical effect in many biological tissues and hydrogels, and its actual influence on growth, migration, and pattern formation. Here, to model these interactions and…

Soft Condensed Matter · Physics 2020-07-07 Yangkun Du , Yipin Su , Chaofeng Lu , Weiqiu Chen , Michel Destrade

Granular packings slowly driven towards their instability threshold are studied using a digital imaging technique as well as a nonlinear acoustic method. The former method allows us to study grain rearrangements on the surface during the…

Exploiting elastic instability in thin films has proven a robust method for creating complex patterns and structures across a wide range of lengthscales. Even the simplest of systems, an elastic membrane with a lattice of pores, under…

Soft Condensed Matter · Physics 2012-10-18 Elisabetta A. Matsumoto , Randall D. Kamien

Microstructural evolution in structural materials is known to occur in response to mechanical loading and can often accommodate substantial plastic deformation through the coupled motion of grain boundaries (GBs). This can produce desirable…

Mesoscale and Nanoscale Physics · Physics 2025-06-06 Daniel Bugas , Brandon Runnels

We study a shape evolution framework in which the deformation of shapes from time t to t + dt is governed by a regularized anisotropic elasticity model. More precisely, we assume that at each time shapes are infinitesimally deformed from a…

Optimization and Control · Mathematics 2019-01-01 Dai-Ni Hsieh , Sylvain Arguillère , Nicolas Charon , Michael I. Miller , Laurent Younes

Helically close-packed states of filaments are common in natural and engineered material systems, ranging from nanoscopic biomolecules to macroscopic structural components. While the simplest models of helical close-packing, described by…

Soft Condensed Matter · Physics 2024-05-07 Benjamin R. Greenvall , Gregory M. Grason

The study of the interactions of living adherent cells with mechanically stable (visco)elastic materials enables understanding and exploiting physiological phenomena mediated by cell-extracellular communication. However, insight on the…

Dry granular materials such as sand, gravel, pills, or agricultural grains, can become rigid when compressed or sheared. At low density, one can distort the shape of a container of granular material without encountering any resistance.…

Soft Condensed Matter · Physics 2022-08-08 Yiqiu Zhao , Yuchen Zhao , Dong Wang , Hu Zheng , Bulbul Chakraborty , Joshua E. S. Socolar

If you walk on sand, it supports your weight. How do the disordered forces between particles in sand organize, to keep you from sinking? This simple question is surprisingly difficult to answer experimentally: measuring forces in three…

Soft Condensed Matter · Physics 2015-03-12 Nicolas Brodu , Joshua A. Dijksman , Robert P. Behringer

Stick-slip motion, a common phenomenon observed during crawling of cells, is found to be strongly sensitive to the substrate stiffness. Stick-slip behaviours have previously been investigated typically using purely elastic substrates. For a…

Biological Physics · Physics 2019-07-31 Partho Sakha De , Rumi De

We investigate experimentally the distribution of configurations of a ring with an elementary topological constraint, a ``figure-8'' twist. Using vibrated granular chains, which permit controlled preparation and direct observation of such a…

Soft Condensed Matter · Physics 2015-07-22 M. B. Hastings , Z. A. Daya , E. Ben-Naim , R. E. Ecke