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Diverse processes--e.g. bioremediation, biofertilization, and microbial drug delivery--rely on bacterial migration in disordered, three-dimensional (3D) porous media. However, how pore-scale confinement alters bacterial motility is unknown…

Soft Condensed Matter · Physics 2019-05-09 Tapomoy Bhattacharjee , Sujit S. Datta

We investigate the possibility of a striped inhomoegenous phase occurring as an electronic system with an order parameter linearly coupled to the elastic degrees of freedom is tuned through the electronic phase transition. We find that in…

Strongly Correlated Electrons · Physics 2023-03-23 Giuliano Chiriacò , Andrew J. Millis

Stress paths in granular matter often suffer sudden large-scale rearrangements when the system is slightly perturbed, i.e. granular systems are unstable. We show in this paper that the observed instability is due to the minimally rigid, or…

Soft Condensed Matter · Physics 2007-05-23 Cristian F. Moukarzel

The present work deals with the injection and packing of a flexible polymeric rod of length $L$ into a simply connected rectangular domain of area $XY$. As the injection proceeds, the rod bends over itself and it stores elastic energy in…

Soft Condensed Matter · Physics 2017-03-14 T A Sobral , M A F Gomes

Confinement is a versatile and well-established tool to study the properties of polymers either to understand biological processes or to develop new nano-biomaterials. We investigate the conformations of a semiflexible polymer ring in weak…

Soft Condensed Matter · Physics 2010-06-25 Katja Ostermeir , Karen Alim , Erwin Frey

We address the folding induced by differential growth in soft layered solids via an elementary model that consists of a soft growing neo-Hookean elastic layer adhered to a deep elastic substrate. As the layer/substrate modulus ratio is…

Soft Condensed Matter · Physics 2015-09-30 Tuomas Tallinen , John S. Biggins

The transport of deformable particles through porous media underlies a wealth of applications ranging from filtration to oil recovery to the transport and spreading of biological agents. Using direct numerical simulations, we analyze the…

Soft Condensed Matter · Physics 2020-06-09 Brato Chakrabarti , Charles Gaillard , David Saintillan

When stressed sufficiently, solid materials yield and deform plastically via reorganization of microscopic constituents. Indeed, it is possible to alter the micro-structure of materials by judicious application of stress, an empirical pro-…

Soft Condensed Matter · Physics 2021-08-09 K. L. Galloway , Xiaoguang Ma , Nathan C. Keim , Douglas J. Jerolmack , Arjun G. Yodh , Paulo E. Arratia

Exact solutions are derived for the problem of a two-dimensional, infinitely anisotropic, linear-elastic medium containing a periodic lattice of voids. The matrix material possesses either one infinitely soft, or one infinitely hard loading…

Materials Science · Physics 2008-04-17 Francois Willot , Yves-Patrick Pellegrini , Pedro Ponte Castaneda

The kinetics of dislocations is studied with computer simulation at loadings of different intensity. It is established that the dislocations have a few different structural states. The dislocations "with the micropore" play important role…

Materials Science · Physics 2007-05-23 L. S. Metlov

A wide range of disordered materials, from biological to geological assemblies, feature discrete elements undergoing large shape changes. How significant geometrical variations at the microscopic scale affect the response of the assembly,…

Soft Condensed Matter · Physics 2024-12-20 Samuel Poincloux , Kazumasa A. Takeuchi

The ordering of rod-like particles in soft, deformable containers emerges from the interplay of anisotropic interactions, geometric confinement, and boundary compliance. This competition couples internal particle organization to container…

Soft Condensed Matter · Physics 2026-05-22 Stijn van der Ham , André F. V. Matias , Marjolein Dijkstra , Hanumantha Rao Vutukuri

The experimental results presented in this paper show the influence of the elastic deformation of porous solids on the adsorption process. With p+-type porous silicon formed on highly boron doped (100) Si single crystal, we can make…

Soft Condensed Matter · Physics 2015-05-13 Annie Grosman , Camille Ortega

Differential growth processes play a prominent role in shaping leaves and biological tissues. Using both analytical and numerical calculations, we consider the shapes of closed, elastic strips which have been subjected to an inhomogeneous…

Materials Science · Physics 2011-01-19 Bryan Gin-ge Chen , Christian D. Santangelo

We study the mechanics of a reversible decohesion (unzipping) of an elastic layer subjected to quasi-static end-point loading. At the micro level the system is simulated by an elastic chain of particles interacting with a rigid foundation…

Other Quantitative Biology · Quantitative Biology 2015-05-13 F. Maddalena , D. Percivale , G. Puglisi , L. Truskinovsky

Molecular dynamics simulations are performed to investigate the plastic response of a model glass to a local shear transformation in a quiescent system. The deformation of the material is induced by a spherical inclusion that is gradually…

Soft Condensed Matter · Physics 2015-09-30 Nikolai V. Priezjev

We examine the conformations of a model for a short segment of closed DNA. The molecule is represented as a cylindrically symmetric elastic rod with a constraint corresponding to a specification of the linking number. We obtain analytic…

Soft Condensed Matter · Physics 2009-10-31 Boris Fain , Joseph Rudnick

In active matter systems, deformable boundaries provide a mechanism to organize internal active stresses and perform work on the external environment. To study a minimal model of such a system, we perform particle-based simulations of an…

Soft Condensed Matter · Physics 2022-01-05 Matthew S. E. Peterson , Aparna Baskaran , Michael F. Hagan

We study the elastic response of rigid, wire frame particles in concentrated, glassy suspensions to a step strain by applying the simple, geometric methods developed in part I. The wire frame particles are comprised of thin, rigid rods of…

Soft Condensed Matter · Physics 2021-07-28 David A. King , Masao Doi , Erika Eiser

The evolution of occupied volume under progressive fragmentation of granular matter is studied using a purely geometric model. Rather than modelling disorder directly, properties are investigated by analysing highly ordered reference…

Soft Condensed Matter · Physics 2026-03-25 Malkhazi A. Meladze
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