English
Related papers

Related papers: Dataflow programming for the analysis of molecular…

200 papers

The formation of biomolecular materials via dynamical interfacial processes such as self-assembly and fusion, for diverse compositions and external conditions, can be efficiently probed using ensemble Molecular Dynamics. However, this…

We present MadFlow, a first general multi-purpose framework for Monte Carlo (MC) event simulation of particle physics processes designed to take full advantage of hardware accelerators, in particular, graphics processing units (GPUs). The…

Computational Physics · Physics 2021-08-18 Stefano Carrazza , Juan Cruz-Martinez , Marco Rossi , Marco Zaro

Generative Agentic AI systems are emerging as a powerful paradigm for automating complex, multi-step tasks. However, many existing frameworks for building these systems introduce significant complexity, a steep learning curve, and…

Artificial Intelligence · Computer Science 2025-11-13 Deven Panchal

Robotic fabric manipulation has applications in home robotics, textiles, senior care and surgery. Existing fabric manipulation techniques, however, are designed for specific tasks, making it difficult to generalize across different but…

Diffusion model deployment has been suffering from high energy consumption and inference latency despite its superior performance in visual generation tasks. Dynamic voltage and frequency scaling (DVFS) offers a promising solution to…

Hardware Architecture · Computer Science 2026-04-13 Jinqi Wen , Tong Xie , Runsheng Wang , Meng Li

Simulation ensembles are a common tool in physics for understanding how a model outcome depends on input parameters. We analyze an active particle system, where each particle can use energy from its surroundings to propel itself. A…

Human-Computer Interaction · Computer Science 2023-03-21 Marina Evers , Raphael Wittkowski , Lars Linsen

Atomistic simulations are essential tools in chemistry and materials science, accelerating the discovery of novel catalysts, energy storage materials, and pharmaceuticals. However, running these simulations remains challenging due to the…

Chemical Physics · Physics 2025-06-11 Thang D. Pham , Aditya Tanikanti , Murat Keçeli

Methods: We have developed a software suite (DataSet Tracker) for real-time analysis designed to run on computers, smartphones, and smart glasses hardware and suitable for resource-constrained, on-the-fly computing in microscopes without…

Quantitative Methods · Quantitative Biology 2025-08-13 Alexandre Matov

Memory bandwidth is strongly correlated to the complexity of the memory access pattern of a running application. To improve memory performance of applications with irregular and/or unpredictable memory patterns, we need tools to analyze…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-10 Pavlos Aimoniotis , Maria Rafaela Gkeka , Nikolaos Bellas

Many scientific disciplines have traditionally advanced by iterating over hypotheses using labor-intensive trial-and-error, which is a slow and expensive process. Recent advances in computing, digitalization, and machine learning have…

Other Computer Science · Computer Science 2025-07-10 Carlos Sevilla-Salcedo , Armi Tiihonen , Mahsa Asadi , Kevin Sebastian Luck , Aras Umut Erarslan , Arto Klami , Samuel Kaski

Synchronous Data Flow (SDF) model is widely used for specifying signal processing or streaming applications. Since modern embedded applications become more complex with dynamic behavior changes at run-time, several extensions of the SDF…

Other Computer Science · Computer Science 2017-10-20 Hanwoong Jung , Hyunok Oh , Soonhoi Ha

This proposal presents a graph computing framework intending to support both online and offline computing on large dynamic graphs efficiently. The framework proposes a new data model to support rich evolving vertex and edge data types. It…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-08 Zhao Yu Dong

Robotic fabric manipulation has applications in home robotics, textiles, senior care and surgery. Existing fabric manipulation techniques, however, are designed for specific tasks, making it difficult to generalize across different but…

Molecular dynamics is widely used to study various phenomena, such as diffusion, shock wave propagation, and plasma dynamics. A wide range of software packages supports the expanding scope of molecular dynamics applications. However, the…

Computational Physics · Physics 2025-12-01 I. S. Galtsov , R. V. Muratov , G. V. Vyskvarko , S. A. Murzov , S. A. Dyachkov , P. R. Levashov

Deep learning is one of the fastest growing technologies in computer science with a plethora of applications. But this unprecedented growth has so far been limited to the consumption of deep learning experts. The primary challenge being a…

Human-Computer Interaction · Computer Science 2019-08-20 Srikanth Tamilselvam , Naveen Panwar , Shreya Khare , Rahul Aralikatte , Anush Sankaran , Senthil Mani

A lot of research relies on data analysis scripts to process, clean, and visualize data. However, recent studies show that these scripts are often hard to comprehend and maintain, hindering reproducibility and reuse, accompanied by a lack…

Software Engineering · Computer Science 2026-04-20 Florian Sihler , Oliver Gerstl , Lars Pfrenger , Julian Schubert , Matthias Tichy

A force field is a critical component in molecular dynamics simulations for computational drug discovery. It must achieve high accuracy within the constraints of molecular mechanics' (MM) limited functional forms, which offers high…

Machine Learning · Computer Science 2024-10-10 Tianze Zheng , Ailun Wang , Xu Han , Yu Xia , Xingyuan Xu , Jiawei Zhan , Yu Liu , Yang Chen , Zhi Wang , Xiaojie Wu , Sheng Gong , Wen Yan

To address the ``reusability dilemma'' and structural hallucinations in enterprise Agentic AI,this paper proposes ReusStdFlow, a framework centered on a novel ``Extraction-Storage-Construction'' paradigm. The framework deconstructs…

Artificial Intelligence · Computer Science 2026-02-17 Gaoyang Zhang , Shanghong Zou , Yafang Wang , He Zhang , Ruohua Xu , Feng Zhao

Analyzing non-compilable C/C++ submodules without a resolved build environment remains a critical bottleneck for industrial software evolution. Traditional static analysis tools often fail in these scenarios due to their reliance on…

Software Engineering · Computer Science 2026-02-20 Jaid Monwar Chowdhury , Ahmad Farhan Shahriar Chowdhury , Humayra Binte Monwar , Mahmuda Naznin

Dynamic graph visualization attracts researchers' concentration as it represents time-varying relationships between entities in multiple domains (e.g., social media analysis, academic cooperation analysis, team sports analysis). Integrating…

Human-Computer Interaction · Computer Science 2022-06-13 Baofeng Chang , Sujia Zhu , Qi Jiang , Wang Xia , Jingwei Tang , Lvhan Pan , Ronghua Liang , Guodao Sun