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Real-space refinement of atomic models in macromolecular crystallography or in cryo electron microscopy fits a model to a map obtained experimentally. This requires generating model maps of a limited resolution which moreover may vary from…

Computational Engineering, Finance, and Science · Computer Science 2022-06-22 Ludmila Urzhumtseva , Vladimir Y. Lunin , Alexandre Urzhumtsev

Nonlinear processes lie at the heart of many technologies such as frequency converters and entangled photon sources. Historically, observation and manipulation of these processes, for instance through nanostructures, has been limited to…

Atomic form factors are widely used for the characterization of targets and specimens, from crystallography to biology. By using recent mathematical results, here we derive an analytical expression for the atomic form factor within the…

Atomic Physics · Physics 2015-06-11 L. Safari , J. P. Santos , P. Amaro , K. Jänkälä , F. Fratini

We demonstrate how the mixed dynamic form factor (MDFF) can be interpreted as a quadratic form. This makes it possible to use matrix diagonalization methods to reduce the number of terms that need to be taken into account when calculating…

Materials Science · Physics 2017-02-16 Stefan Löffler , Viktoria Motsch , Peter Schattschneider

We consider a non-spherical colloidal particle immersed in a fluid close to its critical point. The temperature dependence of the corresponding order parameter profile is calculated explicitly. We perform a systematic expansion of the order…

Soft Condensed Matter · Physics 2009-11-13 S. Kondrat , L. Harnau , S. Dietrich

Solving crystal structures from kinematical X-ray or electron diffraction patterns of single crystals requires many more diffracted beams to be recorded than there are atoms in the structure, since the phases of the structure factors can…

Materials Science · Physics 2023-02-13 Christoph T. Koch

Non-linear photonic crystals can be used to provide phase-matching for frequency conversion in optically isotropic materials. The phase-matching mechanism proposed here is a combination of form birefringence and phase velocity dispersion in…

Quantum Physics · Physics 2009-11-10 Michiel J. A. de Dood , William T. M. Irvine , Dirk Bouwmeester

Generative models trained on public databases of protein structures, most of which have been determined by X-ray crystallography, now provide powerful priors for structure prediction. However, they are not readily conditioned on the…

Machine Learning · Computer Science 2026-05-18 Minseo Kim , Huanghao Mai , Jay Shenoy , Alec Follmer , Gordon Wetzstein , Frederic Poitevin

We calculate Sudakov-type form factors for isolated spin-1/2 particles (fermions) entering non-Abelian gauge-field systems. We consider both the on- and the off-mass-shell case using a methodology which rests on a worldline casting of field…

High Energy Physics - Phenomenology · Physics 2009-10-30 G. C. Gellas , A. I. Karanikas , C. N. Ktorides , N. G. Stefanis

An algorithm for determining crystal structures from diffraction data is described which does not rely on the usual Fourier-space formulations of atomicity. The new algorithm implements atomicity constraints in real-space, as well as…

Condensed Matter · Physics 2007-05-23 Veit Elser

The definition for the Slater-type orbitals is generalized. Transformation between an orthonormal basis function and the Slater-type orbital with non-integer principal quantum numbers is investigated. Analytical expressions for the linear…

Chemical Physics · Physics 2022-10-11 A. Bağcı , P. E. Hoggan

We numerically simulate the uniform athermal shearing of bidisperse, frictionless, two dimensional spherocylinders and three dimensional prolate ellipsoids. We focus on the orientational ordering of particles as an asphericity parameter…

Soft Condensed Matter · Physics 2019-05-22 Theodore Marschall , Yann-Edwin Keta , Peter Olsson , S. Teitel

A nonlinear analysis of high-frequency thickness-shear vibrations of AT-cut quartz crystal plates is presented with the two-dimensional finite element method. We expanded both kinematic and constitutive nonlinear Mindlin plate equations and…

Materials Science · Physics 2014-02-20 Ji Wang , Yangyang Chen , Rongxing Wu , Lihong Wang , Huimin Jing , Jianke Du , Yuantai Hu , Guoqing Li

We demonstrate an enhancement of the plane wave expansion method treating two-dimensional photonic crystals by applying Fourier factorization with generally elliptic polarization bases. By studying three examples of periodically arranged…

Optics · Physics 2010-12-16 Roman Antos , Martin Veis

Formula for calculating the atomic scattering factor for spherical x-ray waves is derived and used to solve the near field effects problem in X-ray Fluorescence Holography theory. A rigorous formalism to calculate the X-ray fluorescence…

Materials Science · Physics 2009-11-10 Jianming Bai

We show that the nonlinear interactions between x rays and longer wavelengths in crystals depend strongly on the band structure and related properties. Consequently, these types of interactions can be used as a powerful probe for…

Optics · Physics 2019-12-04 Ron Cohen , Sharon Shwartz

We present a morphological analysis of atom probe data of nanoscale microstructural features, using methods developed by the astrophysics community to describe the shape of superclusters of galaxies. We describe second-phase regions using…

Materials Science · Physics 2020-01-30 Daniel R Mason , Andrew J London

Order parameters based on spherical harmonics and Fourier coefficients already play a significant role in condensed matter research in the context of systems of spherical or point particles. Here, we extend these types of order parameter to…

Soft Condensed Matter · Physics 2010-12-22 Aaron S. Keys , Christopher R. Iacovella , Sharon C. Glotzer

Nonlinear optical generation from a crystalline material can reveal the symmetries of both its lattice structure and underlying ordered electronic phases and can therefore be exploited as a complementary technique to diffraction based…

Strongly Correlated Electrons · Physics 2014-11-04 D. H. Torchinsky , H. Chu , T. Qi , G. Cao , D. Hsieh

Understanding the morphology formation process of solution-cast photoactive layers (PALs) is crucial to derive design rules for optimized and reliable third generation solar cell fabrication. For this purpose, a Phase-Field (PF)…

Materials Science · Physics 2023-10-19 Maxime Siber , Olivier J. J. Ronsin , Jens Harting
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