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Designing scientific instrumentation often requires exploring large, highly constrained design spaces using computationally expensive physics simulations. These simulators pose substantial challenges for integrating evolutionary computation…

MESA (Modules for Experiments in Stellar Astrophysics) has become very popular among astrophysicists as a powerful and reliable code to simulate stellar evolution. Analyzing the output data thoroughly may, however, present some challenges…

Solar and Stellar Astrophysics · Physics 2015-06-11 Maurizio Giannotti , Michael Wise , Aaron Mohammed

In the era of large time-domain spectro-photometric surveys, surface variations such as starspots, chemical inhomogeneities, pulsations, rotational distortions, and binary interactions can now be directly detected and modelled. Accurately…

Solar and Stellar Astrophysics · Physics 2025-11-17 M. Jabłońska , T. Różański , L. Casagrande , H. Shah , P. A. Kołaczek-Szymański , M. Rychlicki , Yuan-Sen Ting

Microwave Imaging is an essential technique for reconstructing the electrical properties of an inaccessible medium. Many approaches have been proposed employing algorithms to solve the Electromagnetic Inverse Scattering Problem associated…

Computational Physics · Physics 2025-06-03 André Costa Batista , Ricardo Adriano , Lucas S. Batista

Markov Chain Monte Carlo (MCMC) excels at sampling complex posteriors but traditionally lags behind nested sampling in accurate evidence estimation, which is crucial for model comparison in astrophysical problems. We introduce reddemcee, an…

Instrumentation and Methods for Astrophysics · Physics 2026-02-25 Pablo A. Peña , James S. Jenkins

This study proposes median consensus embedding (MCE) to address variability in low-dimensional embeddings caused by random initialization in nonlinear dimensionality reduction techniques such as $t$-distributed stochastic neighbor…

Machine Learning · Statistics 2025-12-10 Yui Tomo , Daisuke Yoneoka

In recent years, deep generative models have attracted increasing interest due to their capacity to model complex distributions. Among those models, variational autoencoders have gained popularity as they have proven both to be…

Machine Learning · Computer Science 2023-07-21 Clément Chadebec , Louis J. Vincent , Stéphanie Allassonnière

We introduce a Markov Chain Monte Carlo simulation and data analysis package that extends the CMBEASY software. We have taken special care in implementing an adaptive step algorithm for the Markov Chain Monte Carlo in order to improve…

Astrophysics · Physics 2007-05-23 Michael Doran , Christian M. Mueller

This paper is a guide to the installation and use of the Python package PYESSENCE. PYESSENCE is designed to evolve linear perturbations to Coupled Quintessence models with a arbitrary number of cold dark matter (CDM) fluids and dark energy…

Cosmology and Nongalactic Astrophysics · Physics 2016-08-10 Alexander Leithes

It is shown how the Python library Sympy can be used to compute symbolically the coefficients of the power series solution of the Lane-Emden equation (LEE). Sympy is an open source Python library for symbolic mathematics. The power series…

Mathematical Software · Computer Science 2015-01-27 Klaus Rohe

We introduce ProM3E, a probabilistic masked multimodal embedding model for any-to-any generation of multimodal representations for ecology. ProM3E is based on masked modality reconstruction in the embedding space, learning to infer missing…

Computer Vision and Pattern Recognition · Computer Science 2025-11-06 Srikumar Sastry , Subash Khanal , Aayush Dhakal , Jiayu Lin , Dan Cher , Phoenix Jarosz , Nathan Jacobs

Average-atom models are an important tool in studying matter under extreme conditions, such as those conditions experienced in planetary cores, brown and white dwarfs, and during inertial confinement fusion. In the right context,…

Plasma Physics · Physics 2022-08-31 Timothy J. Callow , Daniel Kotik , Eli Kraisler , Attila Cangi

We present dynesty, a public, open-source, Python package to estimate Bayesian posteriors and evidences (marginal likelihoods) using Dynamic Nested Sampling. By adaptively allocating samples based on posterior structure, Dynamic Nested…

Instrumentation and Methods for Astrophysics · Physics 2020-02-12 Joshua S Speagle

In preparing the way for the Square Kilometre Array and its pathfinders, there is a pressing need to begin probing the transient sky in a fully robotic fashion using the current generation of radio telescopes. Effective exploitation of such…

Instrumentation and Methods for Astrophysics · Physics 2015-08-26 Tim D. Staley , Gemma E. Anderson

ArchNEMESIS is an open-source Python package developed for the analysis of remote sensing spectroscopic observations of planetary atmospheres. It is based on the widely used NEMESIS radiative transfer and retrieval tool, which has been…

Instrumentation and Methods for Astrophysics · Physics 2025-07-29 Juan Alday , Joseph Penn , Patrick G. J. Irwin , Jonathon P. Mason , Jingxuan Yang

We describe AMUSE, the Astrophysical Multipurpose Software Environment, a programming framework designed to manage multi-scale, multi-physics simulations in a hierarchical, extensible, and internally consistent way. Constructed as a…

Instrumentation and Methods for Astrophysics · Physics 2015-03-19 Stephen McMillan , Simon Portegies Zwart , Arjen van Elteren , Alfred Whitehead

To reduce and analyze astronomical images, astronomers can rely on a wide range of libraries providing low-level implementations of legacy algorithms. However, combining these routines into robust and functional pipelines requires a major…

Instrumentation and Methods for Astrophysics · Physics 2021-11-17 Lionel J. Garcia , Mathilde Timmermans , Francisco J. Pozuelos , Elsa Ducrot , Michaël Gillon , Laetitia Delrez , Robert D. Wells , Emmanuël Jehin

The ensemble empirical mode decomposition (EEMD) and its complete variant (CEEMDAN) are adaptive, noise-assisted data analysis methods that improve on the ordinary empirical mode decomposition (EMD). All these methods decompose possibly…

Computation · Statistics 2017-07-04 P. J. J. Luukko , J. Helske , E. Räsänen

pyspeckit is a toolkit and library for spectroscopic analysis in Python. We describe the pyspeckit package and highlight some of its capabilities, such as interactively fitting a model to data, akin to the historically widely-used splot…

Instrumentation and Methods for Astrophysics · Physics 2022-06-01 Adam Ginsburg , Vlas Sokolov , Miguel de Val-Borro , Erik Rosolowsky , Jaime E. Pineda , Brigitta M. Sipőcz , Jonathan D. Henshaw