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$\textit{Pymc-learn}$ is a Python package providing a variety of state-of-the-art probabilistic models for supervised and unsupervised machine learning. It is inspired by $\textit{scikit-learn}$ and focuses on bringing probabilistic machine…

Machine Learning · Statistics 2018-11-05 Daniel Emaasit

Structural Equation Modeling (SEM) is an umbrella term that includes numerous multivariate statistical techniques that are employed throughout a plethora of research areas, ranging from social to natural sciences. Until recently, SEM…

Applications · Statistics 2021-06-10 Georgy Meshcheryakov , Anna A. Igolkina , Maria G. Samsonova

Electromagnetic-Cascades (EmCa) is a Python package for the simulation of electromagnetic cascades in various materials. The showers are modeled using cascade equations and the relevant interactions, specifically pair production,…

High Energy Astrophysical Phenomena · Physics 2019-07-19 Stephan Meighen-Berger , Anatoli Fedynitch , Matthias Huber

We introduce a Markov Chain Monte Carlo simulation and data analysis package for the cosmological computation package Cmbeasy. We have taken special care in implementing an adaptive step algorithm for the Markov Chain Monte Carlo in order…

Astrophysics · Physics 2007-05-23 Christian M. Mueller

ParaMonte::Python (standing for Parallel Monte Carlo in Python) is a serial and MPI-parallelized library of (Markov Chain) Monte Carlo (MCMC) routines for sampling mathematical objective functions, in particular, the posterior distributions…

Mathematical Software · Computer Science 2020-10-05 Amir Shahmoradi , Fatemeh Bagheri , Joshua Alexander Osborne

The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations. It provides a powerful and simple interface for handling large data sets and for calculating and…

ipie is a Python-based auxiliary-field quantum Monte Carlo (AFQMC) package that has undergone substantial improvements since its initial release [J. Chem. Theory Comput., 2023, 19(1): 109-121]. This paper outlines the improved modularity…

pocoMC is a Python package for accelerated Bayesian inference in astronomy and cosmology. The code is designed to sample efficiently from posterior distributions with non-trivial geometry, including strong multimodality and non-linearity.…

Instrumentation and Methods for Astrophysics · Physics 2022-07-13 Minas Karamanis , David Nabergoj , Florian Beutler , John A. Peacock , Uros Seljak

Bayesian inference in biological modeling commonly relies on Markov chain Monte Carlo (MCMC) sampling of a multidimensional and non-Gaussian posterior distribution that is not analytically tractable. Here, we present the implementation of a…

Software Engineering practitioners work using highly diverse methods and practices, and general theories in software engineering are lacking. One attempt at creating a common ground in the area of software engineering methodologies has been…

Software Engineering · Computer Science 2018-08-09 Arthur Evensen , Kai-Kristian Kemell , Xiaofeng Wang , Juhani Risku , Pekka Abrahamsson

In recent years, Predictive Process Mining (PPM) techniques based on artificial neural networks have evolved as a method for monitoring the future behavior of unfolding business processes and predicting Key Performance Indicators (KPIs).…

Almost all applications stop scaling at some point; those that don't are seldom performant when considering time to solution on anything but aspirational/unicorn resources. Recognizing these tradeoffs as well as greater user functionality…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-28 Stephen Hudson , Jeffrey Larson , John-Luke Navarro , Stefan M. Wild

cloelike is a Python package providing modular, composable Gaussian likelihood classes for the main cosmological large-scale structure observables targeted by the ESA Euclid space mission. It is a core component of the CLOE (Cosmology…

In current electronic structure research endeavors such as warm dense matter or machine learning applications, efficient development necessitates non-monolithic software, providing an extendable and flexible interface. The open-source idea…

Computational Physics · Physics 2025-01-17 Wanja Timm Schulze , Sebastian Schwalbe , Kai Trepte , Stefanie Gräfe

This paper introduces a tool for verifying Python programs, which, using type annotation and front-end processing, can harness the capabilities of a bounded model-checking (BMC) pipeline. It transforms an input program into an abstract…

Software Engineering · Computer Science 2024-07-08 Bruno Farias , Rafael Menezes , Eddie B. de Lima Filho , Youcheng Sun , Lucas C. Cordeiro

\texttt{ml\_edm} is a Python 3 library, designed for early decision making of any learning tasks involving temporal/sequential data. The package is also modular, providing researchers an easy way to implement their own triggering strategy…

We present Manify, an open-source Python library for non-Euclidean representation learning. Leveraging manifold learning techniques, Manify provides tools for learning embeddings in (products of) non-Euclidean spaces, performing…

Machine Learning · Computer Science 2025-07-18 Philippe Chlenski , Kaizhu Du , Dylan Satow , Raiyan R. Khan , Itsik Pe'er

bde is a user-friendly Python package for Bayesian Deep Ensembles with a particular focus on tabular data. Built on an efficient JAX implementation of the sampling-based inference method Microcanonical Langevin Ensembles (MILE), it provides…

Machine Learning · Computer Science 2026-05-15 Vyron Arvanitis , Angelos Aslanidis , Emanuel Sommer , David Rügamer

The rapid growth in scale and complexity of both computational and observational astrophysics over the past decade necessitates efficient and intuitive methods for examining and visualizing large datasets. Here, I present {\it AstroBlend},…

Instrumentation and Methods for Astrophysics · Physics 2016-02-11 J. P. Naiman

Dealing with biased data samples is a common task across many statistical fields. In survey sampling, bias often occurs due to unrepresentative samples. In causal studies with observational data, the treated versus untreated group…

Computation · Statistics 2019-07-29 Xiaojing Wang , Jingang Miao , Yunting Sun