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The theory of sparse structures usually uses tree like structures as building blocks. In the context of sparse/dense dichotomy this role is played by graphs with bounded tree depth. In this paper we survey results related to this concept…

Combinatorics · Mathematics 2016-08-09 Jaroslav Nesetril , Patrice Ossona De Mendez

Large graphs abound in machine learning, data mining, and several related areas. A useful step towards analyzing such graphs is that of obtaining certain summary statistics - e.g., or the expected length of a shortest path between two…

Machine Learning · Statistics 2013-12-02 Mikhail Langovoy , Suvrit Sra

There are several data structures which can calculate the prefix sums of an array efficiently, while handling point updates on the array, such as Segment Trees and Binary Indexed Trees (BIT). Both these data structures can handle the these…

Data Structures and Algorithms · Computer Science 2016-12-30 Anubhav Baweja

Dynamic graphs (DG) describe dynamic interactions between entities in many practical scenarios. Most existing DG representation learning models combine graph convolutional network and sequence neural network, which model spatial-temporal…

Machine Learning · Computer Science 2024-01-17 Ling Wang , Ye Yuan

Chordal graphs are intersection graphs of subtrees of a tree T. We investigate the complexity of the partial representation extension problem for chordal graphs. A partial representation specifies a tree T' and some pre-drawn subtrees of…

Computational Complexity · Computer Science 2013-05-22 Pavel Klavik , Jan Kratochvil , Yota Otachi , Toshiki Saitoh

Contour trees have been developed to visualize or encode scalar data in imaging technologies and scientific simulations. Contours are defined on a continuous scalar field. For discrete data, a continuous function is first interpolated,…

Computer Vision and Pattern Recognition · Computer Science 2022-06-27 Yuqing Song

The junction-tree representation provides an attractive structural property for organizing a decomposable graph. In this study, we present two novel stochastic algorithms, which we call the junction-tree expander and junction-tree collapser…

Statistics Theory · Mathematics 2021-02-16 Jimmy Olsson , Tetyana Pavlenko , Felix L. Rios

String diagrams are a graphical language used to represent processes that can be composed sequentially or in parallel, which correspond graphically to horizontal or vertical juxtaposition. In this paper we demonstrate how to compute the…

Category Theory · Mathematics 2024-04-04 Celia Rubio-Madrigal , Jules Hedges

Acting on time-critical events by processing ever growing social media or news streams is a major technical challenge. Many of these data sources can be modeled as multi-relational graphs. Continuous queries or techniques to search for rare…

Databases · Computer Science 2013-06-12 Sutanay Choudhury , Lawrence Holder , George Chin , John Feo

We present a dynamic data structure for maintaining the persistent homology of a time series of real numbers. The data structure supports local operations, including the insertion and deletion of an item and the cutting and concatenating of…

Data Structures and Algorithms · Computer Science 2024-07-03 Sebastiano Cultrera di Montesano , Herbert Edelsbrunner , Monika Henzinger , Lara Ost

The displayed tree phylogenetic network model is shown to sit as a natural submodel of the graphical model associated to a directed acyclic graph (DAG). This representation allows to derive a number of results about the displayed tree…

Populations and Evolution · Quantitative Biology 2025-08-01 Seth Sullivant

Evolving phenomena, often complex, can be represented using knowledge graphs, which have the capability to model heterogeneous data from multiple sources. Nowadays, a considerable amount of sources delivering periodic updates to knowledge…

Databases · Computer Science 2026-03-23 Jey Puget Gil , Emmanuel Coquery , John Samuel , Gilles Gesquiere

Current paper introduces a Hypergraph Graph model of data storage which can be represented as a hybrid data structure based on Hypergraph and Graph. The pro-posed data structure is claimed to realize complex combinatorial structures. The…

Data Structures and Algorithms · Computer Science 2013-12-02 Shiladitya Munshi , Ayan Chakraborty , Debajyoti Mukhopadhyay

Building on prior work that established Matrix Quasi-tree Theorems for special embedded graphs, in this paper, we develop a comprehensive theory applicable to all embedded graphs. We introduce symbolic skew-adjacency matrices and reduction…

Combinatorics · Mathematics 2025-12-02 Qingying Deng , Xian'an Jin , Qi Yan , Yexiang Yan

This paper introduces a new methodology for constructing a network of companies called a dynamic asset graph. This is similar to the dynamic asset tree studied recently, as both are based on correlations between asset returns. However, the…

Statistical Mechanics · Physics 2009-11-10 J. -P. Onnela , A. Chakraborti , K. Kaski , J. Kertesz , A. Kanto

Let $G$ be a connected graph of order $n$. A spanning $k$-tree of $G$ is a spanning tree with the maximum degree at most $k$, and a spanning $k$-ended-tree of $G$ is a spanning tree at most $k$ leaves, where $k\geq2$ is an integer. This…

Combinatorics · Mathematics 2025-06-10 Jifu Lin , Zenan Du , Xinghui Zhao , Lihua You

We study spectra of noncommutative dynamical systems, representations of fractal groups, and regular graphs. We explicitly compute these spectra for five examples of groups acting on rooted trees, and in three cases obtain totally…

Group Theory · Mathematics 2009-11-28 Laurent Bartholdi , Rostislav I. Grigorchuk

Dynamic network data are now available in a wide range of contexts and domains. Several representation formalisms exist to represent dynamic networks, but there is no well-known method to choose one representation over another for a given…

Social and Information Networks · Computer Science 2020-10-15 Remy Cazabet

Interest in inverse dynamical, spectral and scattering problems for differential equations on graphs is motivated by possible applications to nano-electronics and quantum waveguides and by a variety of other classical and quantum…

Analysis of PDEs · Mathematics 2025-05-13 S. A. Avdonin , V. S. Mikhaylov , K. B. Nurtazina

Dynamic programming is widely used for exact computations based on tree decompositions of graphs. However, the space complexity is usually exponential in the treewidth. We study the problem of designing efficient dynamic programming…

Data Structures and Algorithms · Computer Science 2014-06-16 Martin Furer , Huiwen Yu