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The technological advancements of the modern era have enabled the collection of huge amounts of data in science and beyond. Extracting useful information from such massive datasets is an ongoing challenge as traditional data visualization…

Applications · Statistics 2017-01-30 Rebecca L Barter , Bin Yu

Heatmap is a common geovisualization method that interpolates and visualizes a set of point observations on a map surface. Most of online web mapping libraries implement a one-pass heatmap algorithm using HTML5 canvas or WebGL for efficient…

Graphics · Computer Science 2022-12-16 Yan Y. Liu , Melissa Allen-Dumas

Phylogenetic trees are the primary framework for conveying evolutionary relationships. While many tools exist for visualizing phylogenetic trees, most are limited to static graphics, require coding expertise, or are developed for a specific…

Populations and Evolution · Quantitative Biology 2026-05-15 Zachary S. L. Foster , Jeff H. Chang , Niklaus J. Grunwald

Motivation: The visualization and analysis of high-dimensional data are essential in biomedical research. There is a need for secure, scalable, and reproducible tools to facilitate data exploration and interpretation. Results: We introduce…

Quantitative Methods · Quantitative Biology 2025-04-15 Xijin Ge

OpenML is an online machine learning platform where researchers can easily share data, machine learning tasks and experiments as well as organize them online to work and collaborate more efficiently. In this paper, we present an R package…

The rise of the programmable web offers new opportunities for the empirically driven social sciences. The access, compilation and preparation of data from the programmable web for statistical analysis can, however, involve substantial…

Computation · Statistics 2016-07-20 Ulrich Matter

ClusterPyXT is a new software pipeline to generate spectral temperature, X-ray surface brightness, pressure, and density maps from X-ray observations of galaxy clusters. These data products help elucidate the physics of processes occurring…

High Energy Astrophysical Phenomena · Physics 2019-06-07 Brian Alden , Eric J. Hallman , David Rapetti , Jack O. Burns , Abhirup Datta

This paper presents maplet, an open-source R package for the creation of highly customizable, fully reproducible statistical pipelines for omics data analysis, with a special focus on metabolomics-based methods. It builds on the…

The R package colorspace provides a flexible toolbox for selecting individual colors or color palettes, manipulating these colors, and employing them in statistical graphics and data visualizations. In particular, the package provides a…

As interactive web-based geovisualization becomes increasingly vital across disciplines, there is a growing need for open-source frameworks that support dynamic, multi-attribute spatial analysis and accessible design. This paper introduces…

Human-Computer Interaction · Computer Science 2025-09-10 Sarigai Sarigai , Liping Yang , Katie Slack , Carolyn Fish , Michaela Buenemann , Qiusheng Wu , Yan Lin , Joseph A. Cook , David Jacobs

The linked micromaps approach was originally developed as an improvement to choropleth maps for displaying statistical summaries connected with spatial areal units, such as countries, states, and counties. Two R packages to create linked…

Applications · Statistics 2026-04-15 Randall Powers , Wendy Martinez

This article presents an open-source Python package for simulating micro-thermoelectric generators, based on the work by D. Beretta et al. (Sustainable Energy Fuels, 2017). Featuring a user-friendly graphical user interface and robust…

Mesoscale and Nanoscale Physics · Physics 2025-10-21 D. Beretta

The NTMpy code package allows for simulating the one-dimensional thermal response of multilayer samples after optical excitation, as in a typical pump-probe experiment. Several Python routines are combined and optimized to solve coupled…

Other Condensed Matter · Physics 2021-05-19 Lukas Alber , Valentino Scalera , Vivek Unikandanunni , Daniel Schick , Stefano Bonetti

CMasher is a Python package that provides a curated collection of scientific colormaps, showcased in the online documentation (https://cmasher.readthedocs.io). The colormaps in CMasher are all designed to be perceptually uniform sequential…

Image and Video Processing · Electrical Eng. & Systems 2020-03-03 Ellert van der Velden

Gammapy is a Python package for high-level gamma-ray data analysis built on Numpy, Scipy and Astropy. It enables us to analyze gamma-ray data and to create sky images, spectra and lightcurves, from event lists and instrument response…

Cloud computing is essential for modern enterprises, requiring robust tools to monitor and manage Large-Scale Cloud Systems (LCS). Traditional monitoring tools often miss critical insights due to the complexity and volume of LCS telemetry…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-05 Sarah Sohana , William Pourmajidi , John Steinbacher , Andriy Miranskyy

SkyPy is an open-source Python package for simulating the astrophysical sky. It comprises a library of physical and empirical models across a range of observables and a command-line script to run end-to-end simulations. The library provides…

growclusters for R is a package that estimates a partition structure for multivariate data. It does this by implementing a hierarchical version of k-means clustering that accounts for possible known dependencies in a collection of datasets,…

Mathematical Software · Computer Science 2024-05-01 Randall Powers , Wendy Martinez , Terrance Savitsky

Motivation Network visualization is critical for effective communication in various fields of knowledge. Currently, a gap separates network manipulation from network visualization in programming environments. Users often export network data…

Other Statistics · Statistics 2024-09-30 Danilo Oliveira Imparato , João Vitor F. Cavalcante , Rodrigo J. S. Dalmolin

We present vivid, an R package for visualizing variable importance and variable interactions in machine learning models. The package provides a range of displays including heatmap and graph-based displays for viewing variable importance and…

Computation · Statistics 2024-10-15 Alan Inglis , Andrew Parnell , Catherine Hurley
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